C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000432_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000121390-ENSG00000132950 CGP 9606 13:19674752-19863636
GeneTranscriptPositionBiotype
ENSG00000121390 (PSPC1)
paraspeckle component 1 		ENST00000338910 (PSPC1-002) 19702500-19782917 protein_coding
ENST00000427943 (PSPC1-004) 19759347-19783002 protein_coding
ENST00000471658 (PSPC1-001) 19674756-19782917 nonsense_mediated_decay
ENST00000492741 (PSPC1-005) 19675388-19782942 nonsense_mediated_decay
ENST00000497722 (PSPC1-003) 19674752-19677938 processed_transcript
ENST00000619300 (PSPC1-201) 19702871-19783019 protein_coding
ENSG00000132950 (ZMYM5)
zinc finger, MYM-type 5 		ENST00000337963 (ZMYM5-201) 19823484-19863636 protein_coding
ENST00000382905 (ZMYM5-003) 19837465-19863524 protein_coding
ENST00000382907 (ZMYM5-001) 19837453-19863508 protein_coding
ENST00000382909 (ZMYM5-002) 19823482-19851796 retained_intron
ENST00000467542 (ZMYM5-004) 19837465-19863524 retained_intron
ENST00000495534 (ZMYM5-005) 19837465-19863524 retained_intron
ENST00000502168 (ZMYM5-006) 19823853-19852150 protein_coding
ENST00000535942 (ZMYM5-007) 19823482-19863612 retained_intron
ENSG00000223576 (RP11-61K9.2)
 ENST00000422148 (RP11-61K9.2-001) 19841827-19843672 antisense
ENSG00000233469 (ST6GALNAC4P1)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1 		ENST00000435385 (ST6GALNAC4P1-001) 19818121-19818619 processed_pseudogene
ENSG00000275014 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000489872 (Metazoa_SRP.1-305) 19736975-19737254 misc_RNA
CIL_000432_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021938-ENSMUSG00000040123 CGP 10090 14:56722441-56811716
GeneTranscriptPositionBiotype
ENSMUSG00000021938 (Pspc1)
paraspeckle protein 1 		ENSMUST00000022507 (Pspc1-001) 56722441-56778316 protein_coding
ENSMUST00000163924 (Pspc1-002) 56723986-56778316 protein_coding
ENSMUST00000168524 (Pspc1-004) 56748535-56761867 retained_intron
ENSMUST00000168575 (Pspc1-003) 56748858-56777927 nonsense_mediated_decay
ENSMUSG00000040123 (Zmym5)
zinc finger, MYM-type 5 		ENSMUST00000039812 (Zmym5-201) 56790585-56811716 protein_coding
ENSMUST00000111285 (Zmym5-202) 56790588-56811716 protein_coding
ENSMUST00000173954 (Zmym5-001) 56792929-56811464 protein_coding
ENSMUSG00000079489 (C030013D06Rik)
RIKEN cDNA C030013D06 gene 		ENSMUST00000113723 (C030013D06Rik-001) 56733657-56734954 sense_intronic
ENSMUSG00000094250 (Gm4479)
predicted gene 4479 		ENSMUST00000178807 (Gm4479-201) 56787517-56787687 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000432_0001ENSG00000121390ENST00000338910ENST00000427943ENST00000471658ENST00000492741ENST00000497722ENST00000619300ENSG00000132950ENST00000337963ENST00000382905ENST00000382907ENST00000382909ENST00000467542ENST00000495534ENST00000502168ENST00000535942ENSG00000223576ENST00000422148ENSG00000233469ENST00000435385ENSG00000275014ENST00000489872CIL_000432_0002ENSMUSG00000021938ENSMUST00000022507ENSMUST00000163924ENSMUST00000168524ENSMUST00000168575ENSMUSG00000040123ENSMUST00000039812ENSMUST00000111285ENSMUST00000173954ENSMUSG00000079489ENSMUST00000113723ENSMUSG00000094250ENSMUST00000178807
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000432_0001ENSG00000121390ENST00000338910ENST00000427943ENST00000471658ENST00000492741ENST00000619300ENSG00000132950ENST00000337963ENST00000382905ENST00000382907ENST00000382909ENST00000467542ENST00000495534ENST00000502168ENST00000535942ENSG00000223576ENST00000422148ENSG00000233469ENST00000435385ENSG00000275014ENST00000489872CIL_000432_0002ENSMUSG00000021938ENSMUST00000022507ENSMUST00000163924ENSMUST00000168575ENSMUSG00000040123ENSMUST00000039812ENSMUST00000111285ENSMUST00000173954ENSMUSG00000079489ENSMUST00000113723ENSMUSG00000094250ENSMUST00000178807
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121390 ENST00000338910 N/A 1.642±0.00 N/A 3.751±1.63 4.800±0.00 2.308±1.29 1.631±0.00 1.299±0.00 4.605±0.00 4.071±0.00 N/A 3.835±0.98 1.855±0.59 2.165±0.00
ENST00000427943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.514±2.09 N/A N/A N/A
ENST00000471658 2.334±0.00 2.468±0.00 N/A 5.126±0.00 2.440±0.00 2.708±0.00 3.144±0.00 N/A 1.812±0.00 2.580±0.00 4.539±0.00 2.779±0.76 4.055±1.58 9.717±0.00
ENST00000492741 N/A N/A N/A 5.122±1.05 4.986±1.37 1.887±0.00 1.383±0.43 3.392±1.08 2.818±1.10 5.020±0.28 1.814±0.00 7.569±4.50 5.995±2.30 12.395±6.58
ENST00000497722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619300 2.122±0.00 4.351±0.00 N/A 5.922±0.00 2.249±0.00 N/A 2.767±0.00 4.027±0.00 1.089±0.00 N/A 2.096±1.22 14.418±9.52 12.605±10.95 29.290±23.00
ENSG00000132950 ENST00000337963 0.706±0.00 1.460±0.00 N/A N/A 0.514±0.00 0.480±0.00 1.091±0.00 0.619±0.00 0.521±0.00 N/A 0.402±0.00 2.563±0.11 0.480±0.09 2.228±0.00
ENST00000382905 0.438±0.00 N/A N/A 0.471±0.00 1.129±0.00 N/A N/A N/A 0.572±0.00 1.304±0.00 N/A 2.085±0.00 0.533±0.00 2.565±0.00
ENST00000382907 N/A N/A N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A 9.486±0.00 1.887±1.32 19.719±0.00
ENST00000382909 0.226±0.00 N/A 0.102±0.00 N/A N/A N/A N/A N/A 0.484±0.00 0.988±0.00 N/A 1.221±0.00 N/A 0.689±0.00
ENST00000467542 N/A 1.240±0.00 N/A 0.553±0.16 0.856±0.00 1.436±0.00 0.796±0.40 N/A 0.574±0.00 N/A N/A 1.041±0.00 N/A N/A
ENST00000495534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.160±0.00 N/A 0.566±0.00 N/A
ENST00000502168 0.580±0.00 0.973±0.00 0.170±0.00 1.006±0.12 0.852±0.21 0.904±0.16 0.466±0.03 0.963±0.06 0.493±0.10 1.290±0.14 1.053±0.00 1.374±0.13 0.301±0.08 3.230±0.74
ENST00000535942 N/A N/A N/A N/A 0.288±0.00 0.386±0.00 N/A N/A N/A N/A 0.279±0.00 0.691±0.00 N/A 1.806±0.00
ENSG00000223576 ENST00000422148 0.353±0.00 1.379±0.00 N/A 0.339±0.00 0.460±0.00 0.093±0.00 0.232±0.00 0.488±0.00 0.160±0.00 0.418±0.00 0.096±0.00 0.140±0.00 N/A 0.544±0.00
ENSG00000233469 ENST00000435385 0.180±0.00 1.169±0.00 N/A 0.323±0.00 0.883±0.52 0.792±0.00 N/A 0.430±0.00 N/A 0.338±0.00 0.057±0.00 0.341±0.15 0.326±0.11 0.437±0.06
ENSG00000275014 ENST00000489872 N/A 0.451±0.00 N/A 0.531±0.39 0.336±0.00 1.892±0.00 N/A N/A N/A 1.061±0.00 0.060±0.00 3.532±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021938 ENSMUST00000022507 6.737±2.68 4.127±1.14 9.861±0.53 30.867±5.16 3.044±1.13 3.138±0.87 2.047±0.32 2.887±0.34 7.707±7.86 5.618±0.86 2.901±0.37 11.987±2.32 15.243±9.00 19.027±5.97
ENSMUST00000163924 1.172±0.00 N/A 0.940±0.03 N/A 0.541±0.33 N/A N/A N/A 1.696±0.51 N/A N/A N/A N/A N/A
ENSMUST00000168524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168575 N/A N/A N/A 121.535±0.00 N/A N/A N/A N/A N/A N/A N/A 130.708±0.00 143.203±88.75 266.714±0.00
ENSMUSG00000040123 ENSMUST00000039812 N/A 1.498±0.80 N/A N/A 1.303±0.00 0.658±0.09 N/A N/A 0.402±0.07 1.088±0.00 N/A 1.766±0.68 N/A N/A
ENSMUST00000111285 N/A 1.534±0.78 1.591±0.00 1.152±0.11 2.549±0.00 1.472±1.06 0.377±0.04 0.745±0.00 0.667±0.17 0.745±0.00 N/A 1.716±1.20 1.030±0.53 0.430±0.07
ENSMUST00000173954 1.044±0.00 2.046±0.76 11.462±0.02 4.227±0.90 1.789±0.72 1.990±0.42 1.217±0.18 2.853±0.00 2.703±1.45 2.459±0.32 3.194±0.48 5.746±2.71 8.025±2.08 3.230±0.31
ENSMUSG00000079489 ENSMUST00000113723 0.240±0.04 0.137±0.00 0.449±0.05 1.012±0.62 0.546±0.21 0.372±0.15 0.093±0.05 0.147±0.06 0.550±0.35 0.316±0.13 0.036±0.01 0.373±0.20 0.343±0.35 0.283±0.14
ENSMUSG00000094250 ENSMUST00000178807 N/A N/A N/A N/A N/A N/A 45.150±14.54 N/A N/A N/A N/A N/A N/A N/A

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