C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: junctophilin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022208 Jph4 10090 - 14:55106830-55116935 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022819 Jph4-001 55106830-55116935 protein_coding
  ENSMUST00000124493 Jph4-003 55107277-55115552 protein_coding
  ENSMUST00000132992 Jph4-004 55109642-55110558 retained_intron
  ENSMUST00000133954 Jph4-002 55111490-55116580 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022819ENSMUST00000124493ENSMUST00000132992ENSMUST00000133954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022819 0.966±0.66 0.512±0.16 0.788±0.00 36.012±10.76 0.046±0.03 0.917±0.21 0.057±0.01 0.036±0.02 0.031±0.04 0.041±0.01 0.048±0.02 1.704±0.67 0.125±0.08 1.133±0.63
ENSMUST00000124493 1.012±0.91 1.531±0.68 0.494±0.01 16.800±4.06 0.156±0.04 1.460±0.34 0.055±0.03 0.048±0.02 0.029±0.03 0.095±0.02 0.060±0.02 4.046±1.43 0.083±0.06 1.966±0.39
ENSMUST00000132992 N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A 0.148±0.00 N/A
ENSMUST00000133954 0.050±0.01 N/A N/A 8.612±0.27 0.065±0.02 0.634±0.00 0.019±0.00 0.033±0.01 0.011±0.01 N/A N/A 0.300±0.01 0.017±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_0003BV CIL_0003BV_0002 CGP 14:55098578-55116935
CIL_0001QP CIL_0001QP_0002 CGP 14:55106830-55241435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005790 IDA smooth endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0007612 IGI learning
GO:0016021 IEA integral component of membrane
GO:0043198 IDA dendritic shaft
GO:0048167 IGI regulation of synaptic plasticity
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000092051 JPH4 junctophilin 4 protein_coding Homo_sapiens

Loading