C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junctophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124493 Jph4-003 ENSMUSG00000022208 10090 - 14:55107277-55115552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124493 1.012±0.91 1.531±0.68 0.494±0.01 16.800±4.06 0.156±0.04 1.460±0.34 0.055±0.03 0.048±0.02 0.029±0.03 0.095±0.02 0.060±0.02 4.046±1.43 0.083±0.06 1.966±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_0003BV CIL_0003BV_0002 CGP 14:55098578-55116935
CIL_0001QP CIL_0001QP_0002 CGP 14:55106830-55241435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005790 IDA smooth endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0007612 IGI learning
GO:0016021 IEA integral component of membrane
GO:0043198 IDA dendritic shaft
GO:0048167 IGI regulation of synaptic plasticity
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356300 JPH4-001 protein_coding Homo_sapiens 0 2911
ENST00000397118 JPH4-002 protein_coding Homo_sapiens 0 2913
ENST00000544177 JPH4-004 protein_coding Homo_sapiens 0 952
ENST00000553505 JPH4-005 retained_intron Homo_sapiens 0 1764
ENST00000622501 JPH4-201 protein_coding Homo_sapiens 0 2654

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