C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcalumenin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022519 Srl 10090 - 16:4480216-4541816 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023161 Srl-001 4480228-4523075 protein_coding
  ENSMUST00000090500 Srl-002 4480216-4523075 protein_coding
  ENSMUST00000132284 Srl-003 4493603-4523063 retained_intron
  ENSMUST00000133440 Srl-004 4487579-4541816 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023161ENSMUST00000090500ENSMUST00000133440
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023161 N/A N/A 0.077±0.00 7.224±0.67 0.132±0.00 17.522±3.09 0.540±0.24 0.047±0.02 1.381±0.07 128.959±6.70 0.230±0.00 N/A 0.049±0.00
ENSMUST00000090500 0.595±0.18 2.981±0.25 3.041±0.12 8.151±8.73 0.640±0.08 34.614±6.88 1.182±0.16 0.342±0.20 1.257±0.40 147.364±49.50 1.861±0.40 0.357±0.04 0.536±0.18
ENSMUST00000133440 N/A N/A N/A N/A 0.845±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OD CIL_0000OD_0002 CGP 16:4287529-4541816
CIL_00032P CIL_00032P_0002 CGP 16:4480216-4559720

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0016529 IEA sarcoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018306 srl sarcalumenin protein_coding Danio_rerio
ENSG00000185739 SRL sarcalumenin protein_coding Homo_sapiens

Loading