C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcalumenin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023161 Srl-001 ENSMUSG00000022519 10090 - 16:4480228-4523075 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000023161
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000023161 0.077±0.00 7.224±0.67 0.132±0.00 17.522±3.09 0.540±0.24 0.047±0.02 1.381±0.07 128.959±6.70 0.230±0.00 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OD CIL_0000OD_0002 CGP 16:4287529-4541816
CIL_00032P CIL_00032P_0002 CGP 16:4480216-4559720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0016529 IEA sarcoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399609 SRL-001 protein_coding Homo_sapiens 0 1862
ENST00000537996 SRL-004 protein_coding Homo_sapiens 0 1860
ENST00000572111 SRL-002 nonsense_mediated_decay Homo_sapiens 0 1882

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