C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: large subunit GTPase 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143170 Lsg1-004 ENSMUSG00000022538 10090 - 16:30561371-30587589 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000143170
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000143170 4.323±1.24 7.411±1.53 3.074±0.08 5.022±3.02 5.050±1.54 3.012±0.75 2.126±0.43 5.106±0.94 3.892±1.43 4.392±0.64 1.937±0.70 9.739±3.48 12.778±9.24 7.181±4.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NE CIL_0000NE_0002 CGP 16:30511855-30587592
CIL_0003YH CIL_0003YH_0002 CGP 16:30560494-30602797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IBA GTPase activity
GO:0005829 IBA cytosol
GO:0006184 IBA GTP catabolic process
GO:0042254 IBA ribosome biogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265245 LSG1-001 protein_coding Homo_sapiens 0 859
ENST00000437613 LSG1-004 protein_coding Homo_sapiens 0 359
ENST00000461343 LSG1-005 retained_intron Homo_sapiens 0 351
ENST00000466391 LSG1-006 retained_intron Homo_sapiens 0 291

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