C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022685 Parn 10090 - 16:13537964-13668170 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058884 Parn-201 13537964-13668170 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058884 7.137±1.19 7.347±2.08 10.468±0.37 8.015±1.38 6.522±2.91 3.519±0.87 2.851±0.31 5.166±2.10 6.184±0.99 6.623±0.33 2.228±0.25 10.568±5.77 13.076±3.81 4.291±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DW CIL_0007DW_0002 CGP 16:13256481-13668170
CIL_0007DV CIL_0007DV_0002 CGP 16:13537964-13703612

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000289 IDA nuclear-transcribed mRNA poly(A) tail shortening
GO:0004535 IEA poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0019901 IEA protein kinase binding
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024702 parn poly(A)-specific ribonuclease (deadenylation nuclease) protein_coding Danio_rerio
ENSG00000140694 PARN poly(A)-specific ribonuclease protein_coding Homo_sapiens

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