C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007DW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186260-ENSG00000140694 CGP 9606 16:14071321-14632728
GeneTranscriptPositionBiotype
ENSG00000140694 (PARN)
poly(A)-specific ribonuclease 		ENST00000341484 (PARN-002) 14436605-14630276 protein_coding
ENST00000420015 (PARN-003) 14436273-14630259 protein_coding
ENST00000437198 (PARN-001) 14435701-14630267 protein_coding
ENST00000538472 (PARN-005) 14599935-14630218 nonsense_mediated_decay
ENST00000539279 (PARN-004) 14436668-14630238 protein_coding
ENST00000562715 (PARN-012) 14576072-14584791 processed_transcript
ENST00000562896 (PARN-006) 14627176-14632728 protein_coding
ENST00000563155 (PARN-009) 14608107-14610699 retained_intron
ENST00000563641 (PARN-007) 14586318-14630260 nonsense_mediated_decay
ENST00000563697 (PARN-013) 14555686-14584760 processed_transcript
ENST00000564113 (PARN-011) 14555654-14592077 processed_transcript
ENST00000564882 (PARN-014) 14446957-14501689 processed_transcript
ENST00000564904 (PARN-015) 14482638-14565075 processed_transcript
ENST00000566021 (PARN-008) 14610665-14630251 processed_transcript
ENST00000569444 (PARN-010) 14555654-14610743 protein_coding
ENSG00000186260 (MKL2)
MKL/myocardin-like 2 		ENST00000318282 (MKL2-201) 14079288-14266772 protein_coding
ENST00000571589 (MKL2-001) 14071322-14266771 protein_coding
ENST00000571770 (MKL2-012) 14258123-14262440 nonsense_mediated_decay
ENST00000572400 (MKL2-003) 14071322-14144785 retained_intron
ENST00000572567 (MKL2-004) 14186717-14241425 protein_coding
ENST00000572588 (MKL2-006) 14247411-14266773 retained_intron
ENST00000573051 (MKL2-005) 14200330-14241468 protein_coding
ENST00000573434 (MKL2-010) 14140625-14170470 protein_coding
ENST00000574045 (MKL2-002) 14071339-14261448 protein_coding
ENST00000574998 (MKL2-007) 14071321-14210298 protein_coding
ENST00000575537 (MKL2-009) 14071344-14149536 processed_transcript
ENST00000575768 (MKL2-011) 14140633-14214935 processed_transcript
ENST00000575833 (MKL2-008) 14092837-14141529 processed_transcript
ENSG00000199130 (MIR365A)
microRNA 365a 		ENST00000362260 (MIR365A-201) 14309270-14309380 miRNA
ENSG00000201075 (Y_RNA)
Y RNA 		ENST00000364205 (Y_RNA.1-417) 14275508-14275600 misc_RNA
ENSG00000242430 (RN7SL274P)
RNA, 7SL, cytoplasmic 274, pseudogene 		ENST00000492268 (RN7SL274P-201) 14601823-14602094 misc_RNA
ENSG00000260009 (RP11-65J21.1)
 ENST00000566054 (RP11-65J21.1-001) 14363109-14370266 lincRNA
ENSG00000262454 (RP11-65J21.3)
 ENST00000570945 (RP11-65J21.3-001) 14302288-14326353 lincRNA
ENST00000571639 (RP11-65J21.3-003) 14302505-14326285 lincRNA
ENST00000575792 (RP11-65J21.3-002) 14323294-14326284 lincRNA
ENSG00000262529 (CTA-276F8.2)
 ENST00000570581 (CTA-276F8.2-001) 14191820-14200277 antisense
ENSG00000263257 (RP11-65J21.4)
 ENST00000572479 (RP11-65J21.4-001) 14408039-14418872 lincRNA
ENSG00000276564 (CTA-276F8.1)
 ENST00000618736 (CTA-276F8.1-001) 14150833-14153235 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007DW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000009569-ENSMUSG00000022685 CGP 10090 16:13256481-13668170
GeneTranscriptPositionBiotype
ENSMUSG00000009569 (Mkl2)
MKL/myocardin-like 2 		ENSMUST00000009713 (Mkl2-003) 13256481-13415063 protein_coding
ENSMUST00000056715 (Mkl2-201) 13265076-13332919 protein_coding
ENSMUST00000115809 (Mkl2-004) 13256506-13332922 protein_coding
ENSMUST00000149359 (Mkl2-001) 13358421-13417529 protein_coding
ENSMUSG00000022685 (Parn)
poly(A)-specific ribonuclease (deadenylation nuclease) 		ENSMUST00000058884 (Parn-201) 13537964-13668170 protein_coding
ENSMUSG00000077488 (Gm25276)
predicted gene, 25276 		ENSMUST00000104300 (Gm25276-201) 13531428-13531551 snoRNA
ENSMUSG00000099411 (RP23-402A16.1)
RIKEN cDNA 2310015D24 gene 		ENSMUST00000186717 (RP23-402A16.1-002) 13519193-13521107 lincRNA
ENSMUST00000187920 (RP23-402A16.1-001) 13514131-13520419 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DW_0001ENSG00000140694ENST00000341484ENST00000420015ENST00000437198ENST00000538472ENST00000539279ENST00000562715ENST00000562896ENST00000563155ENST00000563641ENST00000563697ENST00000564113ENST00000564882ENST00000564904ENST00000566021ENST00000569444ENSG00000186260ENST00000318282ENST00000571589ENST00000571770ENST00000572400ENST00000572567ENST00000572588ENST00000573051ENST00000573434ENST00000574045ENST00000574998ENST00000575537ENST00000575768ENST00000575833ENSG00000199130ENST00000362260ENSG00000201075ENST00000364205ENSG00000242430ENST00000492268ENSG00000260009ENST00000566054ENSG00000262454ENST00000570945ENST00000571639ENST00000575792ENSG00000262529ENST00000570581ENSG00000263257ENST00000572479ENSG00000276564ENST00000618736CIL_0007DW_0002ENSMUSG00000009569ENSMUST00000009713ENSMUST00000056715ENSMUST00000115809ENSMUST00000149359ENSMUSG00000022685ENSMUST00000058884ENSMUSG00000077488ENSMUST00000104300ENSMUSG00000099411ENSMUST00000186717ENSMUST00000187920
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DW_0001ENSG00000140694ENST00000341484ENST00000420015ENST00000437198ENST00000539279ENST00000563641ENST00000564904ENST00000566021ENST00000569444ENSG00000186260ENST00000318282ENST00000571589ENST00000572400ENST00000572567ENST00000572588ENST00000573051ENSG00000199130ENST00000362260ENSG00000201075ENST00000364205ENSG00000242430ENST00000492268ENSG00000260009ENST00000566054ENSG00000262454ENST00000570945ENST00000571639ENST00000575792ENSG00000262529ENST00000570581ENSG00000263257ENST00000572479ENSG00000276564ENST00000618736CIL_0007DW_0002ENSMUSG00000009569ENSMUST00000009713ENSMUST00000149359ENSMUSG00000022685ENSMUST00000058884ENSMUSG00000077488ENSMUST00000104300ENSMUSG00000099411ENSMUST00000186717ENSMUST00000187920
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140694 ENST00000341484 N/A 2.386±0.00 0.775±0.00 5.876±0.00 6.064±0.00 4.498±0.00 2.085±0.00 N/A 5.105±0.00 2.207±0.00 0.339±0.00 3.433±0.00 N/A N/A
ENST00000420015 1.240±0.00 N/A N/A N/A 2.350±0.00 1.519±0.00 N/A 1.026±0.00 N/A N/A N/A N/A N/A N/A
ENST00000437198 N/A N/A N/A 1.997±0.00 1.793±0.35 1.083±0.00 1.101±0.00 2.595±1.30 1.416±0.42 1.606±0.93 4.377±0.00 7.406±3.68 6.522±0.89 9.875±3.87
ENST00000538472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539279 1.820±0.00 N/A N/A 3.674±0.00 N/A N/A N/A 1.597±0.00 N/A N/A N/A N/A N/A N/A
ENST00000562715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563641 N/A N/A N/A N/A 4.110±0.00 N/A N/A N/A N/A N/A N/A 10.177±0.00 18.904±0.00 21.331±0.00
ENST00000563697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.759±0.00 N/A
ENST00000566021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.044±0.00 N/A N/A N/A
ENST00000569444 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.279±0.00 N/A 4.959±0.00 N/A N/A
ENSG00000186260 ENST00000318282 N/A 1.568±0.00 N/A N/A 1.552±0.00 N/A N/A N/A N/A N/A 2.047±0.00 0.763±0.04 0.824±0.00 1.646±0.64
ENST00000571589 4.604±0.00 1.905±0.00 N/A 9.921±0.00 1.305±0.32 1.952±0.00 3.416±0.00 1.196±0.00 0.941±0.26 1.842±0.04 0.907±0.00 2.268±2.12 1.044±0.15 2.874±0.09
ENST00000571770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572400 N/A N/A 1.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572567 N/A N/A N/A N/A 3.110±0.00 2.170±0.00 0.807±0.00 N/A 2.211±0.00 5.879±3.15 N/A 1.329±0.00 N/A N/A
ENST00000572588 N/A N/A N/A N/A N/A 0.961±0.00 N/A 0.776±0.00 1.151±0.00 1.616±0.00 0.202±0.00 0.755±0.36 N/A N/A
ENST00000573051 N/A N/A 1.329±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199130 ENST00000362260 N/A N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000201075 ENST00000364205 N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000242430 ENST00000492268 0.194±0.00 0.202±0.00 N/A 0.359±0.00 0.230±0.03 0.062±0.00 0.180±0.00 0.273±0.00 N/A 0.121±0.00 0.344±0.00 0.506±0.00 0.133±0.00 0.467±0.20
ENSG00000260009 ENST00000566054 N/A N/A N/A 0.056±0.00 0.155±0.00 N/A N/A N/A N/A N/A N/A N/A 0.703±0.00 0.044±0.00
ENSG00000262454 ENST00000570945 0.257±0.00 0.082±0.00 N/A 0.984±0.56 1.714±1.56 0.793±0.64 0.834±0.09 N/A 0.352±0.00 1.216±0.00 2.133±1.64 0.407±0.08 1.945±0.81 0.967±0.51
ENST00000571639 2.406±0.00 0.278±0.00 N/A N/A N/A 0.357±0.00 0.507±0.00 1.552±0.00 N/A 0.346±0.00 0.761±0.00 0.207±0.00 2.301±0.00 6.648±5.85
ENST00000575792 N/A N/A 0.229±0.00 0.244±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.175±0.00
ENSG00000262529 ENST00000570581 0.107±0.00 N/A N/A 0.168±0.00 0.130±0.11 N/A 0.138±0.00 0.024±0.00 N/A N/A N/A 0.212±0.00 N/A 0.208±0.12
ENSG00000263257 ENST00000572479 0.074±0.00 0.051±0.00 N/A N/A N/A N/A 1.079±0.00 N/A N/A 0.022±0.00 N/A 0.061±0.00 0.099±0.00 0.130±0.01
ENSG00000276564 ENST00000618736 0.099±0.00 0.276±0.00 0.238±0.00 0.642±0.14 0.595±0.32 0.859±0.72 0.244±0.15 0.266±0.19 0.049±0.00 1.042±0.91 0.103±0.09 0.254±0.07 0.090±0.03 0.400±0.24
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009569 ENSMUST00000009713 N/A 1.607±0.64 N/A N/A N/A 1.245±0.00 N/A N/A N/A 1.509±0.32 N/A 1.132±0.16 N/A 1.561±0.88
ENSMUST00000056715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149359 3.075±2.36 3.439±0.68 1.317±0.00 5.890±3.72 2.597±1.45 2.803±1.32 1.135±0.00 0.566±0.25 0.835±0.50 6.321±1.80 1.188±0.60 3.356±1.64 3.317±1.00 3.247±0.21
ENSMUSG00000022685 ENSMUST00000058884 7.137±1.19 7.347±2.08 10.468±0.37 8.015±1.38 6.522±2.91 3.519±0.87 2.851±0.31 5.166±2.10 6.184±0.99 6.623±0.33 2.228±0.25 10.568±5.77 13.076±3.81 4.291±0.66
ENSMUSG00000077488 ENSMUST00000104300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1939.020±0.00 N/A N/A
ENSMUSG00000099411 ENSMUST00000186717 N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.065±0.00 N/A 0.350±0.19 N/A 0.161±0.14 N/A 0.377±0.00
ENSMUST00000187920 0.040±0.02 0.090±0.00 N/A 0.020±0.00 0.334±0.12 0.035±0.01 0.383±0.23 0.036±0.01 0.004±0.00 0.113±0.06 1.503±0.46 0.059±0.04 0.005±0.00 0.023±0.00

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