C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A)-specific ribonuclease (deadenylation nuclease)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058884 Parn-201 ENSMUSG00000022685 10090 - 16:13537964-13668170 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058884 7.137±1.19 7.347±2.08 10.468±0.37 8.015±1.38 6.522±2.91 3.519±0.87 2.851±0.31 5.166±2.10 6.184±0.99 6.623±0.33 2.228±0.25 10.568±5.77 13.076±3.81 4.291±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DW CIL_0007DW_0002 CGP 16:13256481-13668170
CIL_0007DV CIL_0007DV_0002 CGP 16:13537964-13703612

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000289 IDA nuclear-transcribed mRNA poly(A) tail shortening
GO:0004535 IEA poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0019901 IEA protein kinase binding
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000152305 parn-001 protein_coding Danio_rerio 0 427
ENSDART00000030873 parn-002 protein_coding Danio_rerio 0 427
ENST00000341484 PARN-002 protein_coding Homo_sapiens 0 1877
ENST00000420015 PARN-003 protein_coding Homo_sapiens 0 1491
ENST00000437198 PARN-001 protein_coding Homo_sapiens 0 1929
ENST00000538472 PARN-005 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000539279 PARN-004 protein_coding Homo_sapiens 0 1168
ENST00000562715 PARN-012 processed_transcript Homo_sapiens 0 396
ENST00000562896 PARN-006 protein_coding Homo_sapiens 0 340
ENST00000563641 PARN-007 nonsense_mediated_decay Homo_sapiens 0 669
ENST00000563697 PARN-013 processed_transcript Homo_sapiens 0 344
ENST00000564113 PARN-011 processed_transcript Homo_sapiens 0 525
ENST00000564904 PARN-015 processed_transcript Homo_sapiens 0 385
ENST00000566021 PARN-008 processed_transcript Homo_sapiens 0 483
ENST00000569444 PARN-010 protein_coding Homo_sapiens 0 693
ENST00000615183 PARN-201 protein_coding Homo_sapiens 0 1929
ENST00000618929 PARN-202 protein_coding Homo_sapiens 0 1491

Loading