C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022710 Usp7 10090 - 16:8689595-8792308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000159281 Usp7-011 8700157-8703781 retained_intron
  ENSMUST00000159287 Usp7-007 8703466-8706927 retained_intron
  ENSMUST00000159387 Usp7-006 8696677-8697581 retained_intron
  ENSMUST00000159503 Usp7-009 8704954-8706219 retained_intron
  ENSMUST00000159509 Usp7-008 8705960-8706828 retained_intron
  ENSMUST00000160326 Usp7-003 8689600-8738420 nonsense_mediated_decay
  ENSMUST00000160405 Usp7-001 8689595-8792308 protein_coding
  ENSMUST00000161046 Usp7-002 8690146-8738342 protein_coding
  ENSMUST00000162141 Usp7-010 8704945-8705309 retained_intron
  ENSMUST00000162445 Usp7-004 8690780-8721656 processed_transcript
  ENSMUST00000162929 Usp7-005 8696177-8698830 retained_intron
  ENSMUST00000172505 Usp7-013 8697651-8706729 nonsense_mediated_decay
  ENSMUST00000173939 Usp7-012 8697476-8698532 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159287ENSMUST00000160326ENSMUST00000160405ENSMUST00000161046ENSMUST00000162445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 94.494±0.00 189.244±90.40 394.925±0.00
ENSMUST00000160326 3.007±0.94 2.352±0.88 7.798±1.18 30.767±9.42 2.704±0.00 2.739±0.56 1.645±0.20 2.320±0.00 12.887±9.83 N/A 4.124±0.58 15.869±12.52 20.927±13.79 29.256±0.00
ENSMUST00000160405 5.550±1.87 N/A N/A 7.647±1.35 6.668±0.00 N/A N/A 3.476±1.21 7.258±3.41 N/A 2.583±0.00 7.212±0.67 13.975±6.95 10.599±2.34
ENSMUST00000161046 7.331±1.40 2.352±0.60 4.801±0.70 7.924±0.00 5.958±1.54 5.932±0.60 4.706±0.58 4.638±1.37 6.290±4.51 8.202±2.24 3.646±1.40 6.162±2.64 10.060±7.35 18.736±7.54
ENSMUST00000162445 N/A N/A N/A 26.661±0.00 N/A N/A N/A N/A N/A N/A N/A 11.013±7.77 42.451±15.86 65.518±58.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EV CIL_0000EV_0002 CGP 16:8658587-8792308
CIL_0000EN CIL_0000EN_0002 CGP 16:8689595-8858916

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002039 IEA p53 binding
GO:0004197 IEA cysteine-type endopeptidase activity
GO:0004221 IEA ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0006283 IEA transcription-coupled nucleotide-excision repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008022 IEA protein C-terminus binding
GO:0008134 IEA transcription factor binding
GO:0008234 IEA cysteine-type peptidase activity
GO:0010216 IEA maintenance of DNA methylation
GO:0016579 IEA protein deubiquitination
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0051090 IEA regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073710 usp7 ubiquitin specific peptidase 7 (herpes virus-associated) protein_coding Danio_rerio
ENSG00000187555 USP7 ubiquitin specific peptidase 7 (herpes virus-associated) protein_coding Homo_sapiens

Loading