C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161046 Usp7-002 ENSMUSG00000022710 10090 - 16:8690146-8738342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161046 7.331±1.40 2.352±0.60 4.801±0.70 7.924±0.00 5.958±1.54 5.932±0.60 4.706±0.58 4.638±1.37 6.290±4.51 8.202±2.24 3.646±1.40 6.162±2.64 10.060±7.35 18.736±7.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EV CIL_0000EV_0002 CGP 16:8658587-8792308
CIL_0000EN CIL_0000EN_0002 CGP 16:8689595-8858916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IEA p53 binding
GO:0004197 IEA cysteine-type endopeptidase activity
GO:0004221 IEA ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0006283 IEA transcription-coupled nucleotide-excision repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008022 IEA protein C-terminus binding
GO:0008134 IEA transcription factor binding
GO:0010216 IEA maintenance of DNA methylation
GO:0016579 IEA protein deubiquitination
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0051090 IEA regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000150953 usp7-001 protein_coding Danio_rerio 0 2531
ENSDART00000024453 usp7-201 protein_coding Danio_rerio 0 2446
ENST00000344836 USP7-001 protein_coding Homo_sapiens 0 5182
ENST00000381886 USP7-004 protein_coding Homo_sapiens 0 4830
ENST00000505925 RP11-252I13.1-001 processed_pseudogene Homo_sapiens 0 2518
ENST00000542333 USP7-003 nonsense_mediated_decay Homo_sapiens 0 2122
ENST00000562051 USP7-016 retained_intron Homo_sapiens 0 233
ENST00000562615 USP7-018 retained_intron Homo_sapiens 0 353
ENST00000563043 USP7-022 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000563085 USP7-002 protein_coding Homo_sapiens 0 4058
ENST00000563961 USP7-006 nonsense_mediated_decay Homo_sapiens 0 4466
ENST00000564117 USP7-011 protein_coding Homo_sapiens 0 627
ENST00000565455 USP7-005 nonsense_mediated_decay Homo_sapiens 0 4486
ENST00000565883 USP7-019 retained_intron Homo_sapiens 0 501
ENST00000566004 USP7-010 protein_coding Homo_sapiens 0 715
ENST00000566131 USP7-015 retained_intron Homo_sapiens 0 335
ENST00000566224 USP7-012 processed_transcript Homo_sapiens 0 200
ENST00000566273 USP7-009 protein_coding Homo_sapiens 0 647
ENST00000567113 USP7-020 retained_intron Homo_sapiens 0 396
ENST00000567329 USP7-013 retained_intron Homo_sapiens 0 457
ENST00000567692 USP7-021 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000569230 USP7-008 protein_coding Homo_sapiens 0 658
ENST00000569448 USP7-017 retained_intron Homo_sapiens 0 562
ENST00000570256 USP7-014 retained_intron Homo_sapiens 0 640

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