C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and calponin homology (CH) domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022801 Lrch3 10090 + 16:32914100-33015647 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023491 Lrch3-001 32914100-33015647 protein_coding
  ENSMUST00000133399 Lrch3-003 32954698-32961734 processed_transcript
  ENSMUST00000135193 Lrch3-005 32914142-33012699 protein_coding
  ENSMUST00000142290 Lrch3-004 32986003-32998631 protein_coding
  ENSMUST00000156928 Lrch3-002 32914123-32989046 retained_intron
  ENSMUST00000163428 Lrch3-009 32979397-32998578 protein_coding
  ENSMUST00000164486 Lrch3-007 32914127-32973924 nonsense_mediated_decay
  ENSMUST00000165616 Lrch3-010 32914142-33012490 protein_coding
  ENSMUST00000165826 Lrch3-006 32979425-32998520 protein_coding
  ENSMUST00000170201 Lrch3-012 32914122-33013143 protein_coding
  ENSMUST00000170899 Lrch3-008 32914122-33013143 protein_coding
  ENSMUST00000171118 Lrch3-011 32914122-33013143 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023491ENSMUST00000164486ENSMUST00000170201
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023491 8.023±5.05 9.936±1.08 11.305±1.30 10.037±4.09 4.942±1.51 2.735±0.94 2.046±0.44 2.616±1.05 3.294±2.12 N/A 1.883±0.73 6.373±2.70 6.636±4.12 4.826±1.87
ENSMUST00000164486 N/A 14.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170201 N/A 4.153±0.00 N/A N/A N/A N/A N/A N/A N/A 7.251±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C7 CIL_0006C7_0002 CGP 16:32877500-33015647
CIL_0006C8 CIL_0006C8_0002 CGP 16:32914100-33056218

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075769 LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 protein_coding Danio_rerio
ENSG00000186001 LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 protein_coding Homo_sapiens

Loading