C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006C7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122068-ENSG00000186001 CGP 9606 3:197737179-197888436
GeneTranscriptPositionBiotype
ENSG00000122068 (FYTTD1)
forty-two-three domain containing 1 		ENST00000241502 (FYTTD1-001) 197749750-197787596 protein_coding
ENST00000412924 (FYTTD1-004) 197749878-197777001 nonsense_mediated_decay
ENST00000415708 (FYTTD1-003) 197749553-197782134 protein_coding
ENST00000418169 (FYTTD1-009) 197749938-197776942 nonsense_mediated_decay
ENST00000424384 (FYTTD1-006) 197750390-197782380 protein_coding
ENST00000426031 (FYTTD1-005) 197750167-197770161 protein_coding
ENST00000428738 (FYTTD1-007) 197737179-197777001 protein_coding
ENST00000492360 (FYTTD1-010) 197778380-197782262 processed_transcript
ENST00000494309 (FYTTD1-002) 197749533-197773436 nonsense_mediated_decay
ENSG00000145016 (KIAA0226)
KIAA0226 		ENST00000273582 (KIAA0226-001) 197671393-197749699 protein_coding
ENST00000296343 (KIAA0226-011) 197675018-197736719 protein_coding
ENST00000413360 (KIAA0226-005) 197674020-197718130 protein_coding
ENST00000415452 (KIAA0226-004) 197676217-197701710 protein_coding
ENST00000447048 (KIAA0226-009) 197694417-197700769 protein_coding
ENST00000449205 (KIAA0226-003) 197700460-197736908 protein_coding
ENST00000467303 (KIAA0226-006) 197701736-197749727 processed_transcript
ENST00000471364 (KIAA0226-010) 197683307-197693954 retained_intron
ENST00000472149 (KIAA0226-007) 197748109-197749347 processed_transcript
ENST00000474214 (KIAA0226-008) 197701860-197736913 protein_coding
ENSG00000186001 (LRCH3)
leucine-rich repeats and calponin homology (CH) domain containing 3 		ENST00000334859 (LRCH3-004) 197791274-197871585 protein_coding
ENST00000414675 (LRCH3-003) 197791264-197883772 protein_coding
ENST00000425562 (LRCH3-006) 197791279-197884302 protein_coding
ENST00000428136 (LRCH3-009) 197866215-197883376 protein_coding
ENST00000433298 (LRCH3-017) 197848001-197883998 protein_coding
ENST00000438796 (LRCH3-001) 197791235-197888436 protein_coding
ENST00000441090 (LRCH3-002) 197791264-197883813 protein_coding
ENST00000443727 (LRCH3-011) 197791226-197829616 nonsense_mediated_decay
ENST00000452660 (LRCH3-015) 197847959-197880559 protein_coding
ENST00000461674 (LRCH3-014) 197847845-197870176 retained_intron
ENST00000466054 (LRCH3-021) 197871423-197876340 retained_intron
ENST00000466845 (LRCH3-023) 197854390-197859439 retained_intron
ENST00000471667 (LRCH3-018) 197858818-197880625 retained_intron
ENST00000473177 (LRCH3-020) 197858822-197880612 retained_intron
ENST00000476664 (LRCH3-022) 197875694-197883685 retained_intron
ENST00000481048 (LRCH3-016) 197852328-197866179 retained_intron
ENST00000483442 (LRCH3-019) 197858821-197875760 retained_intron
ENST00000493726 (LRCH3-012) 197820333-197823465 processed_transcript
ENST00000494069 (LRCH3-013) 197835797-197848499 retained_intron
ENSG00000234742 (AC144530.1)
 ENST00000452862 (AC144530.1-001) 197850400-197850954 processed_pseudogene
ENSG00000273375 (RP11-803P9.1)
 ENST00000610089 (RP11-803P9.1-001) 197789700-197790369 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006C7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022800-ENSMUSG00000022801 CGP 10090 16:32877500-33015647
GeneTranscriptPositionBiotype
ENSMUSG00000022800 (Fyttd1)
forty-two-three domain containing 1 		ENSMUST00000023489 (Fyttd1-001) 32877781-32908875 protein_coding
ENSMUST00000120345 (Fyttd1-007) 32882982-32905630 protein_coding
ENSMUST00000125843 (Fyttd1-006) 32895091-32905779 processed_transcript
ENSMUST00000127493 (Fyttd1-008) 32902099-32905604 retained_intron
ENSMUST00000135854 (Fyttd1-009) 32898750-32905702 retained_intron
ENSMUST00000137863 (Fyttd1-005) 32900224-32905638 retained_intron
ENSMUST00000141590 (Fyttd1-003) 32877851-32898851 retained_intron
ENSMUST00000143151 (Fyttd1-010) 32877500-32891409 processed_transcript
ENSMUST00000145146 (Fyttd1-002) 32877813-32897250 processed_transcript
ENSMUST00000149183 (Fyttd1-004) 32877813-32895256 retained_intron
ENSMUST00000171325 (Fyttd1-201) 32877784-32908963 protein_coding
ENSMUSG00000022801 (Lrch3)
leucine-rich repeats and calponin homology (CH) domain containing 3 		ENSMUST00000023491 (Lrch3-001) 32914100-33015647 protein_coding
ENSMUST00000133399 (Lrch3-003) 32954698-32961734 processed_transcript
ENSMUST00000135193 (Lrch3-005) 32914142-33012699 protein_coding
ENSMUST00000142290 (Lrch3-004) 32986003-32998631 protein_coding
ENSMUST00000156928 (Lrch3-002) 32914123-32989046 retained_intron
ENSMUST00000163428 (Lrch3-009) 32979397-32998578 protein_coding
ENSMUST00000164486 (Lrch3-007) 32914127-32973924 nonsense_mediated_decay
ENSMUST00000165616 (Lrch3-010) 32914142-33012490 protein_coding
ENSMUST00000165826 (Lrch3-006) 32979425-32998520 protein_coding
ENSMUST00000170201 (Lrch3-012) 32914122-33013143 protein_coding
ENSMUST00000170899 (Lrch3-008) 32914122-33013143 protein_coding
ENSMUST00000171118 (Lrch3-011) 32914122-33013143 protein_coding
ENSMUSG00000035629 (1700021K19Rik)
RIKEN cDNA 1700021K19 gene 		ENSMUST00000040986 (1700021K19Rik-001) 32821728-32868351 protein_coding
ENSMUST00000089684 (1700021K19Rik-004) 32821707-32868339 protein_coding
ENSMUST00000115105 (1700021K19Rik-201) 32821703-32868366 protein_coding
ENSMUST00000119810 (1700021K19Rik-002) 32823859-32877766 protein_coding
ENSMUST00000135480 (1700021K19Rik-003) 32823467-32838594 retained_intron
ENSMUST00000140229 (1700021K19Rik-005) 32821707-32824920 retained_intron
ENSMUST00000149621 (1700021K19Rik-006) 32861460-32868338 processed_transcript
ENSMUST00000152920 (1700021K19Rik-008) 32827928-32829718 retained_intron
ENSMUST00000153556 (1700021K19Rik-007) 32835525-32836571 retained_intron
ENSMUSG00000070225 (n-R5s33)
nuclear encoded rRNA 5S 33 		ENSMUST00000093713 (n-R5s33-201) 33001903-33002021 rRNA
ENSMUSG00000091997 (Gm6611)
predicted gene 6611 		ENSMUST00000163830 (Gm6611-001) 32923218-32924489 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006C7_0001ENSG00000122068ENST00000241502ENST00000412924ENST00000418169ENST00000424384ENST00000428738ENSG00000145016ENST00000273582ENSG00000186001ENST00000334859ENST00000414675ENST00000425562ENST00000428136ENST00000438796ENSG00000234742ENST00000452862ENSG00000273375ENST00000610089CIL_0006C7_0002ENSMUSG00000022800ENSMUST00000023489ENSMUST00000135854ENSMUST00000149183ENSMUSG00000022801ENSMUST00000023491ENSMUST00000164486ENSMUST00000170201ENSMUSG00000035629ENSMUST00000040986ENSMUST00000089684ENSMUST00000115105ENSMUST00000119810ENSMUST00000140229ENSMUSG00000070225ENSMUST00000093713ENSMUSG00000091997ENSMUST00000163830
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122068 ENST00000241502 9.513±0.00 7.620±0.00 1.423±0.00 3.008±0.00 5.680±2.43 1.965±0.00 2.550±0.00 1.705±0.00 6.543±0.00 3.841±0.00 2.565±0.48 4.410±3.15 6.911±0.00 14.834±1.20
ENST00000412924 N/A N/A N/A N/A N/A N/A 4.054±0.00 N/A N/A N/A N/A 2.642±0.00 N/A N/A
ENST00000415708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418169 N/A N/A N/A N/A N/A N/A N/A 6.919±0.00 N/A N/A 14.738±0.00 N/A N/A N/A
ENST00000424384 N/A N/A N/A N/A 5.980±1.50 N/A N/A 2.120±0.00 N/A N/A N/A N/A N/A N/A
ENST00000426031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.347±0.00 N/A N/A N/A
ENST00000492360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145016 ENST00000273582 7.011±0.00 N/A N/A 5.365±2.81 2.998±0.83 3.189±1.64 4.120±0.00 N/A 1.397±0.00 1.692±0.00 N/A 4.524±2.66 1.691±0.16 9.282±1.70
ENST00000296343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186001 ENST00000334859 N/A N/A 1.711±0.00 2.473±0.00 3.013±0.00 2.162±0.00 2.044±0.00 N/A 3.295±0.00 7.423±0.00 5.736±0.00 3.050±0.58 2.696±0.00 9.708±0.00
ENST00000414675 N/A N/A N/A N/A N/A N/A N/A N/A 2.553±0.00 3.421±0.00 N/A N/A N/A N/A
ENST00000425562 1.094±0.00 N/A N/A N/A 2.157±0.00 1.581±0.00 2.546±0.00 N/A 0.935±0.00 1.846±0.00 N/A N/A N/A 4.202±0.00
ENST00000428136 N/A N/A N/A 2.406±0.00 N/A N/A N/A N/A N/A N/A 1.393±0.00 N/A N/A 2.778±0.00
ENST00000433298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438796 N/A 4.192±0.00 N/A N/A N/A 1.043±0.00 0.752±0.00 N/A N/A N/A 0.877±0.00 1.158±0.01 N/A 2.893±0.37
ENST00000441090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234742 ENST00000452862 0.183±0.00 0.422±0.00 N/A 0.231±0.00 0.220±0.12 0.563±0.17 0.109±0.01 0.255±0.00 0.071±0.05 0.661±0.25 0.123±0.00 0.634±0.00 0.204±0.02 0.166±0.06
ENSG00000273375 ENST00000610089 0.111±0.00 0.391±0.00 0.164±0.00 0.459±0.04 0.155±0.00 N/A 0.487±0.21 0.128±0.00 0.086±0.00 1.378±0.84 0.555±0.00 0.333±0.08 0.151±0.08 0.294±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022800 ENSMUST00000023489 7.926±1.95 N/A 14.864±1.03 13.385±6.66 8.033±0.00 N/A 8.356±2.03 5.803±0.71 5.861±1.54 N/A 15.708±0.98 10.744±4.52 15.350±5.16 21.921±6.75
ENSMUST00000120345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135854 N/A N/A N/A 52.588±0.00 N/A N/A N/A N/A N/A N/A N/A 49.928±0.00 83.005±2.81 102.479±0.00
ENSMUST00000137863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.635±0.00 66.256±2.39 98.666±0.00
ENSMUST00000171325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022801 ENSMUST00000023491 8.023±5.05 9.936±1.08 11.305±1.30 10.037±4.09 4.942±1.51 2.735±0.94 2.046±0.44 2.616±1.05 3.294±2.12 N/A 1.883±0.73 6.373±2.70 6.636±4.12 4.826±1.87
ENSMUST00000133399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164486 N/A 14.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170201 N/A 4.153±0.00 N/A N/A N/A N/A N/A N/A N/A 7.251±0.00 N/A N/A N/A N/A
ENSMUST00000170899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035629 ENSMUST00000040986 9.670±1.53 11.351±1.65 8.103±0.30 4.274±0.00 15.141±3.65 11.630±1.70 7.674±2.83 9.873±1.98 3.519±0.89 16.135±3.04 7.435±0.54 13.828±3.53 14.531±7.80 8.727±2.07
ENSMUST00000089684 N/A N/A N/A 10.783±2.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115105 N/A 3.103±0.91 N/A N/A 4.445±0.33 N/A N/A N/A 1.040±0.08 N/A N/A 3.154±0.70 7.789±1.00 N/A
ENSMUST00000119810 N/A 3.902±0.79 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.842±0.02 N/A 6.687±0.00
ENSMUST00000135480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140229 N/A N/A 7.276±1.18 N/A N/A N/A N/A 3.179±0.00 1.661±0.00 N/A N/A N/A N/A N/A
ENSMUST00000149621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000070225 ENSMUST00000093713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.310±0.00 N/A
ENSMUSG00000091997 ENSMUST00000163830 0.070±0.04 N/A 0.094±0.02 0.214±0.02 0.124±0.05 0.079±0.00 0.076±0.04 0.125±0.10 0.133±0.07 0.169±0.02 0.052±0.02 0.166±0.05 0.229±0.10 4.570±0.96

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