C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAM domain, SH3 domain and nuclear localization signals, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022876 Samsn1 10090 - 16:75858793-76022270 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114239 Samsn1-003 75858793-75909310 protein_coding
  ENSMUST00000114240 Samsn1-001 75858794-76022270 protein_coding
  ENSMUST00000139691 Samsn1-004 75882531-75909240 retained_intron
  ENSMUST00000147447 Samsn1-006 75883623-75909310 retained_intron
  ENSMUST00000150248 Samsn1-007 75888252-75909279 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114239ENSMUST00000114240ENSMUST00000139691ENSMUST00000147447
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114239 0.812±0.47 0.376±0.18 0.736±0.05 0.410±0.11 3.893±0.88 0.503±0.23 0.271±0.15 0.466±0.32 3.530±3.47 2.240±0.70 0.169±0.29 0.485±0.26 0.437±0.19 0.090±0.10
ENSMUST00000114240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.01
ENSMUST00000139691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00
ENSMUST00000147447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 0.282±0.00 0.101±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MS CIL_0000MS_0003 CGP 16:75755190-76022270
CIL_00031Y CIL_00031Y_0002 CGP 16:75858793-76373827

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001784 IEA phosphotyrosine binding
GO:0002820 IMP negative regulation of adaptive immune response
GO:0005634 IDA nucleus
GO:0005737 ISO cytoplasm
GO:0005829 IDA cytosol
GO:0042995 IEA cell projection
GO:0044822 IEA poly(A) RNA binding
GO:0050732 IMP negative regulation of peptidyl-tyrosine phosphorylation
GO:0050869 IMP negative regulation of B cell activation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054543 samsn1a SAM domain, SH3 domain and nuclear localisation signals, 1a protein_coding Danio_rerio
ENSDARG00000078647 samsn1b SAM domain, SH3 domain and nuclear localisation signals, 1b protein_coding Danio_rerio
ENSG00000155307 SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 protein_coding Homo_sapiens

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