C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAM domain, SH3 domain and nuclear localization signals, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114239 Samsn1-003 ENSMUSG00000022876 10090 - 16:75858793-75909310 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114239 0.812±0.47 0.376±0.18 0.736±0.05 0.410±0.11 3.893±0.88 0.503±0.23 0.271±0.15 0.466±0.32 3.530±3.47 2.240±0.70 0.169±0.29 0.485±0.26 0.437±0.19 0.090±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MS CIL_0000MS_0003 CGP 16:75755190-76022270
CIL_00031Y CIL_00031Y_0002 CGP 16:75858793-76373827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001784 IEA phosphotyrosine binding
GO:0002820 IMP negative regulation of adaptive immune response
GO:0005634 IDA nucleus
GO:0005737 ISO cytoplasm
GO:0005829 IDA cytosol
GO:0042995 IEA cell projection
GO:0044822 IEA poly(A) RNA binding
GO:0050732 IMP negative regulation of peptidyl-tyrosine phosphorylation
GO:0050869 IMP negative regulation of B cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285670 SAMSN1-001 protein_coding Homo_sapiens 0 981
ENST00000400564 SAMSN1-003 protein_coding Homo_sapiens 0 460
ENST00000400566 SAMSN1-002 protein_coding Homo_sapiens 0 1099
ENST00000619120 SAMSN1-201 protein_coding Homo_sapiens 0 983

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