C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAM domain, SH3 domain and nuclear localization signals 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155307 SAMSN1 9606 - 21:14485228-14583402 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285670 SAMSN1-001 14485228-14583402 protein_coding
  ENST00000400564 SAMSN1-003 14485228-14546341 protein_coding
  ENST00000400566 SAMSN1-002 14485228-14546343 protein_coding
  ENST00000463807 SAMSN1-005 14495700-14500606 processed_transcript
  ENST00000493640 SAMSN1-004 14521173-14546313 processed_transcript
  ENST00000619120 SAMSN1-201 14485229-14546360 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285670ENST00000400564ENST00000400566ENST00000463807ENST00000619120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00
ENST00000400564 N/A N/A N/A 0.415±0.00 N/A 1.292±0.00 0.064±0.00 N/A N/A N/A 0.216±0.00 N/A N/A 0.200±0.00
ENST00000400566 3.686±0.00 5.677±0.00 0.558±0.00 1.092±0.00 1.656±1.08 0.649±0.33 0.713±0.60 1.861±0.34 1.063±0.07 6.054±2.71 0.021±0.00 1.008±0.26 1.652±0.31 0.500±0.38
ENST00000463807 N/A N/A N/A 0.250±0.00 N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00
ENST00000619120 N/A N/A N/A 0.486±0.00 1.221±0.00 N/A 0.090±0.00 N/A 0.203±0.00 1.767±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MS CIL_0000MS_0002 CGP 21:14371115-14583402

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001784 IDA phosphotyrosine binding
GO:0002820 ISS negative regulation of adaptive immune response
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005829 IEA cytosol
GO:0042995 IEA cell projection
GO:0044822 IDA poly(A) RNA binding
GO:0050732 ISS negative regulation of peptidyl-tyrosine phosphorylation
GO:0050869 ISS negative regulation of B cell activation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054543 samsn1a SAM domain, SH3 domain and nuclear localisation signals, 1a protein_coding Danio_rerio
ENSDARG00000078647 samsn1b SAM domain, SH3 domain and nuclear localisation signals, 1b protein_coding Danio_rerio
ENSMUSG00000022876 Samsn1 SAM domain, SH3 domain and nuclear localization signals, 1 protein_coding Mus_musculus

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