C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040984-ENSDARG00000054543 CGP 7955 15:28898209-28935841
GeneTranscriptPositionBiotype
ENSDARG00000040984 (hspa13)
heat shock protein 13 		ENSDART00000060049 (hspa13-001) 28898209-28905851 protein_coding
ENSDART00000133781 (hspa13-002) 28904418-28905831 retained_intron
ENSDARG00000054543 (samsn1a)
SAM domain, SH3 domain and nuclear localisation signals, 1a 		ENSDART00000076749 (samsn1a-002) 28913458-28935841 protein_coding
ENSDART00000099947 (samsn1a-001) 28913468-28922361 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000MS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155304-ENSG00000155307 CGP 9606 21:14371115-14583402
GeneTranscriptPositionBiotype
ENSG00000155304 (HSPA13)
heat shock protein 70kDa family, member 13 		ENST00000285667 (HSPA13-001) 14371115-14383187 protein_coding
ENST00000478035 (HSPA13-002) 14378342-14383484 processed_transcript
ENSG00000155307 (SAMSN1)
SAM domain, SH3 domain and nuclear localization signals 1 		ENST00000285670 (SAMSN1-001) 14485228-14583402 protein_coding
ENST00000400564 (SAMSN1-003) 14485228-14546341 protein_coding
ENST00000400566 (SAMSN1-002) 14485228-14546343 protein_coding
ENST00000463807 (SAMSN1-005) 14495700-14500606 processed_transcript
ENST00000493640 (SAMSN1-004) 14521173-14546313 processed_transcript
ENST00000619120 (SAMSN1-201) 14485229-14546360 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0000MS_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032932-ENSMUSG00000022876 CGP 10090 16:75755190-76022270
GeneTranscriptPositionBiotype
ENSMUSG00000022876 (Samsn1)
SAM domain, SH3 domain and nuclear localization signals, 1 		ENSMUST00000114239 (Samsn1-003) 75858793-75909310 protein_coding
ENSMUST00000114240 (Samsn1-001) 75858794-76022270 protein_coding
ENSMUST00000139691 (Samsn1-004) 75882531-75909240 retained_intron
ENSMUST00000147447 (Samsn1-006) 75883623-75909310 retained_intron
ENSMUST00000150248 (Samsn1-007) 75888252-75909279 retained_intron
ENSMUSG00000032932 (Hspa13)
heat shock protein 70 family, member 13 		ENSMUST00000046283 (Hspa13-001) 75755190-75766821 protein_coding
ENSMUST00000114244 (Hspa13-004) 75756640-75766791 protein_coding
ENSMUST00000137806 (Hspa13-002) 75759188-75766782 retained_intron
ENSMUSG00000081250 (Gm15554)
predicted gene 15554 		ENSMUST00000120406 (Gm15554-001) 75772159-75773071 processed_pseudogene
ENSMUSG00000087214 (Gm15555)
predicted gene 15555 		ENSMUST00000128832 (Gm15555-001) 76000784-76009743 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MS_0001ENSDARG00000040984ENSDART00000060049ENSDART00000133781ENSDARG00000054543ENSDART00000076749ENSDART00000099947CIL_0000MS_0002ENSG00000155304ENST00000285667ENST00000478035ENSG00000155307ENST00000285670ENST00000400564ENST00000400566ENST00000463807ENST00000493640ENST00000619120CIL_0000MS_0003ENSMUSG00000022876ENSMUST00000114239ENSMUST00000114240ENSMUST00000139691ENSMUST00000147447ENSMUST00000150248ENSMUSG00000032932ENSMUST00000046283ENSMUST00000114244ENSMUST00000137806ENSMUSG00000081250ENSMUST00000120406ENSMUSG00000087214ENSMUST00000128832
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MS_0001ENSDARG00000040984ENSDART00000060049ENSDARG00000054543ENSDART00000076749ENSDART00000099947CIL_0000MS_0002ENSG00000155304ENST00000285667ENST00000478035ENSG00000155307ENST00000285670ENST00000400564ENST00000400566ENST00000463807ENST00000619120CIL_0000MS_0003ENSMUSG00000022876ENSMUST00000114239ENSMUST00000114240ENSMUST00000139691ENSMUST00000147447ENSMUSG00000032932ENSMUST00000046283ENSMUST00000114244ENSMUST00000137806ENSMUSG00000081250ENSMUST00000120406ENSMUSG00000087214ENSMUST00000128832
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040984 ENSDART00000060049 N/A N/A N/A 3.812±1.00 N/A N/A 5.731±0.81 3.924±0.00 2.724±0.00 N/A 4.086±0.00 N/A N/A N/A
ENSDART00000133781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000054543 ENSDART00000076749 N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A 0.037±0.00 N/A 0.657±0.00 N/A N/A N/A
ENSDART00000099947 N/A N/A N/A 1.902±0.86 N/A N/A 16.593±11.50 27.179±11.82 0.114±0.00 N/A 2.522±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155304 ENST00000285667 5.296±0.00 6.653±0.00 1.982±0.00 12.590±1.56 4.490±0.61 4.591±0.92 2.901±0.96 5.986±3.74 3.302±0.56 6.765±1.15 0.675±0.22 4.938±1.45 5.274±0.66 8.246±2.10
ENST00000478035 N/A N/A 3.625±0.00 N/A N/A N/A N/A N/A N/A N/A 3.112±0.00 N/A N/A N/A
ENSG00000155307 ENST00000285670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00
ENST00000400564 N/A N/A N/A 0.415±0.00 N/A 1.292±0.00 0.064±0.00 N/A N/A N/A 0.216±0.00 N/A N/A 0.200±0.00
ENST00000400566 3.686±0.00 5.677±0.00 0.558±0.00 1.092±0.00 1.656±1.08 0.649±0.33 0.713±0.60 1.861±0.34 1.063±0.07 6.054±2.71 0.021±0.00 1.008±0.26 1.652±0.31 0.500±0.38
ENST00000463807 N/A N/A N/A 0.250±0.00 N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00
ENST00000493640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619120 N/A N/A N/A 0.486±0.00 1.221±0.00 N/A 0.090±0.00 N/A 0.203±0.00 1.767±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022876 ENSMUST00000114239 0.812±0.47 0.376±0.18 0.736±0.05 0.410±0.11 3.893±0.88 0.503±0.23 0.271±0.15 0.466±0.32 3.530±3.47 2.240±0.70 0.169±0.29 0.485±0.26 0.437±0.19 0.090±0.10
ENSMUST00000114240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.01
ENSMUST00000139691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00
ENSMUST00000147447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 0.282±0.00 0.101±0.00 N/A
ENSMUST00000150248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032932 ENSMUST00000046283 3.181±0.72 2.168±0.56 6.517±0.26 7.333±1.95 2.776±0.71 1.266±0.29 2.004±0.24 2.453±0.36 3.418±0.47 4.122±0.46 1.799±0.35 4.304±2.95 11.680±3.07 2.085±0.50
ENSMUST00000114244 3.750±1.21 1.069±0.38 N/A N/A 1.473±0.78 1.871±0.47 0.975±0.12 1.859±1.27 1.837±0.30 2.922±0.94 0.454±0.07 2.983±1.01 4.134±1.04 1.845±0.57
ENSMUST00000137806 N/A 0.159±0.00 N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A 0.765±0.00 N/A N/A
ENSMUSG00000081250 ENSMUST00000120406 0.072±0.00 0.105±0.00 0.040±0.00 0.031±0.00 0.090±0.07 0.095±0.00 N/A 0.092±0.07 0.050±0.03 0.135±0.00 N/A 0.192±0.13 0.051±0.00 0.108±0.08
ENSMUSG00000087214 ENSMUST00000128832 N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.00 N/A N/A N/A N/A N/A

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