C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 50B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022964 Tmem50b 10090 - 16:91574503-91597800 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023686 Tmem50b-001 91574503-91597800 protein_coding
  ENSMUST00000133180 Tmem50b-003 91575758-91597664 nonsense_mediated_decay
  ENSMUST00000141885 Tmem50b-002 91580202-91597800 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023686ENSMUST00000133180
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023686 30.671±4.24 26.446±3.71 36.184±3.75 17.189±4.86 21.106±5.28 30.858±3.74 27.398±5.55 18.392±2.67 3.271±0.94 69.041±1.43 5.647±0.64 18.102±3.88 3.999±1.77 14.719±6.01
ENSMUST00000133180 N/A N/A N/A 16.598±0.00 N/A N/A N/A N/A N/A N/A N/A 13.914±0.00 3.065±1.28 6.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443
CIL_0003V2 CIL_0003V2_0002 CGP 16:91547072-91597800
CIL_00021F CIL_00021F_0002 CGP 16:91574503-91619026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000142188 TMEM50B transmembrane protein 50B protein_coding Homo_sapiens

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