C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00021F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142188-ENSG00000177692 CGP 9606 21:33432485-33491720
GeneTranscriptPositionBiotype
ENSG00000142188 (TMEM50B)
transmembrane protein 50B 		ENST00000420455 (TMEM50B-002) 33432485-33479943 nonsense_mediated_decay
ENST00000432504 (TMEM50B-005) 33465378-33479289 protein_coding
ENST00000441128 (TMEM50B-011) 33450521-33468926 nonsense_mediated_decay
ENST00000442441 (TMEM50B-004) 33450547-33479936 nonsense_mediated_decay
ENST00000459909 (TMEM50B-003) 33468420-33479948 retained_intron
ENST00000468874 (TMEM50B-008) 33436884-33449189 processed_transcript
ENST00000470682 (TMEM50B-007) 33432798-33449410 processed_transcript
ENST00000474272 (TMEM50B-006) 33465018-33467135 retained_intron
ENST00000484377 (TMEM50B-009) 33432485-33448964 processed_transcript
ENST00000542230 (TMEM50B-001) 33449135-33480011 protein_coding
ENSG00000159128 (IFNGR2)
interferon gamma receptor 2 (interferon gamma transducer 1) 		ENST00000290219 (IFNGR2-001) 33402896-33437521 protein_coding
ENST00000381995 (IFNGR2-002) 33403432-33437521 protein_coding
ENST00000405436 (IFNGR2-007) 33403466-33437502 protein_coding
ENST00000421802 (IFNGR2-005) 33432319-33479348 protein_coding
ENST00000439213 (IFNGR2-003) 33403427-33432216 nonsense_mediated_decay
ENST00000545369 (IFNGR2-004) 33403441-33436944 nonsense_mediated_decay
ENSG00000177692 (DNAJC28)
DnaJ (Hsp40) homolog, subfamily C, member 28 		ENST00000314399 (DNAJC28-001) 33488208-33491473 protein_coding
ENST00000381947 (DNAJC28-002) 33488190-33491720 protein_coding
ENST00000402202 (DNAJC28-004) 33488219-33491691 protein_coding
ENST00000617313 (DNAJC28-201) 33485530-33491473 protein_coding
ENSG00000215088 (RPS5P3)
ribosomal protein S5 pseudogene 3 		ENST00000414617 (RPS5P3-001) 33481580-33482195 processed_pseudogene
ENSG00000231355 (AP000302.58)
 ENST00000450928 (AP000302.58-001) 33482499-33484258 antisense
CIL_00021F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022964-ENSMUSG00000039763 CGP 10090 16:91574503-91619026
GeneTranscriptPositionBiotype
ENSMUSG00000022964 (Tmem50b)
transmembrane protein 50B 		ENSMUST00000023686 (Tmem50b-001) 91574503-91597800 protein_coding
ENSMUST00000133180 (Tmem50b-003) 91575758-91597664 nonsense_mediated_decay
ENSMUST00000141885 (Tmem50b-002) 91580202-91597800 nonsense_mediated_decay
ENSMUSG00000039763 (Dnajc28)
DnaJ (Hsp40) homolog, subfamily C, member 28 		ENSMUST00000049244 (Dnajc28-001) 91615726-91618994 protein_coding
ENSMUST00000133731 (Dnajc28-003) 91617102-91619026 protein_coding
ENSMUST00000143058 (Dnajc28-002) 91616837-91618991 protein_coding
ENSMUST00000169982 (Dnajc28-201) 91614257-91618999 protein_coding
ENSMUSG00000085337 (Gm15964)
predicted gene 15964 		ENSMUST00000138207 (Gm15964-001) 91611468-91623861 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00021F_0001ENSG00000142188ENST00000420455ENST00000432504ENST00000441128ENST00000442441ENST00000459909ENST00000468874ENST00000470682ENST00000474272ENST00000484377ENST00000542230ENSG00000159128ENST00000290219ENST00000381995ENST00000405436ENST00000421802ENST00000439213ENST00000545369ENSG00000177692ENST00000314399ENST00000381947ENST00000402202ENST00000617313ENSG00000215088ENST00000414617ENSG00000231355ENST00000450928CIL_00021F_0002ENSMUSG00000022964ENSMUST00000023686ENSMUST00000133180ENSMUST00000141885ENSMUSG00000039763ENSMUST00000049244ENSMUST00000133731ENSMUST00000143058ENSMUST00000169982ENSMUSG00000085337ENSMUST00000138207
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00021F_0001ENSG00000142188ENST00000420455ENST00000442441ENST00000542230ENSG00000159128ENST00000290219ENST00000381995ENST00000405436ENST00000545369ENSG00000177692ENST00000314399ENST00000381947ENST00000402202ENST00000617313ENSG00000215088ENST00000414617ENSG00000231355ENST00000450928CIL_00021F_0002ENSMUSG00000022964ENSMUST00000023686ENSMUST00000133180ENSMUSG00000039763ENSMUST00000049244ENSMUST00000143058ENSMUST00000169982ENSMUSG00000085337ENSMUST00000138207
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142188 ENST00000420455 N/A N/A N/A N/A N/A N/A N/A 1.329±0.00 N/A N/A N/A 5.462±0.10 N/A N/A
ENST00000432504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.949±0.00 10.790±0.00 29.098±0.00
ENST00000459909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542230 14.217±0.00 9.603±0.00 3.256±0.00 8.324±0.54 10.058±2.65 9.865±4.82 6.884±3.99 15.150±13.05 7.018±1.11 8.823±5.49 6.670±3.86 13.218±4.35 7.830±2.45 12.886±5.79
ENSG00000159128 ENST00000290219 N/A N/A N/A N/A 5.424±0.00 N/A N/A 2.110±0.00 N/A N/A N/A 13.480±0.00 12.901±0.00 N/A
ENST00000381995 N/A N/A N/A 6.756±0.00 N/A N/A 2.960±0.00 N/A N/A N/A 4.502±0.00 N/A N/A N/A
ENST00000405436 47.039±0.00 45.391±0.00 2.362±0.00 20.244±0.00 26.669±0.00 30.156±0.00 13.514±0.00 35.555±0.00 12.967±7.02 29.085±23.38 5.870±0.00 31.308±18.30 51.781±10.83 26.231±4.07
ENST00000421802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545369 N/A N/A 8.855±0.00 12.613±0.00 19.708±0.00 19.208±0.00 2.607±0.00 6.999±0.00 8.581±0.00 8.604±0.00 10.406±0.00 29.781±0.00 23.793±0.00 N/A
ENSG00000177692 ENST00000314399 N/A N/A 0.939±0.00 0.286±0.00 N/A 0.375±0.00 N/A N/A N/A N/A N/A N/A 0.131±0.00 2.388±0.95
ENST00000381947 N/A N/A 0.264±0.00 1.565±0.00 0.150±0.04 0.281±0.00 1.130±0.16 0.593±0.21 0.540±0.11 0.814±0.00 0.159±0.00 0.120±0.07 0.337±0.00 1.077±0.00
ENST00000402202 0.152±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.17 0.229±0.09 4.683±0.00
ENST00000617313 N/A 0.306±0.00 N/A 0.304±0.00 0.083±0.00 N/A N/A 0.339±0.00 N/A N/A 0.160±0.13 0.071±0.01 0.016±0.00 0.433±0.00
ENSG00000215088 ENST00000414617 0.090±0.00 0.261±0.00 N/A 0.108±0.00 N/A 0.032±0.00 0.057±0.00 0.034±0.00 0.260±0.00 N/A 0.136±0.00 0.130±0.00 N/A 0.227±0.00
ENSG00000231355 ENST00000450928 N/A 0.090±0.00 N/A 0.140±0.08 N/A N/A 0.016±0.00 0.610±0.00 0.045±0.00 0.239±0.00 N/A 0.093±0.00 N/A 0.323±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022964 ENSMUST00000023686 30.671±4.24 26.446±3.71 36.184±3.75 17.189±4.86 21.106±5.28 30.858±3.74 27.398±5.55 18.392±2.67 3.271±0.94 69.041±1.43 5.647±0.64 18.102±3.88 3.999±1.77 14.719±6.01
ENSMUST00000133180 N/A N/A N/A 16.598±0.00 N/A N/A N/A N/A N/A N/A N/A 13.914±0.00 3.065±1.28 6.162±0.00
ENSMUST00000141885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039763 ENSMUST00000049244 0.241±0.00 0.628±0.30 0.389±0.00 2.165±1.74 0.620±0.11 0.546±0.12 1.871±0.28 0.887±0.28 0.504±0.24 0.377±0.12 N/A 1.718±2.60 0.504±0.37 4.595±5.40
ENSMUST00000133731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143058 0.455±0.06 0.530±0.02 N/A N/A 0.505±0.22 0.307±0.13 N/A 0.878±0.00 0.414±0.18 0.445±0.11 N/A 0.501±0.11 0.168±0.03 2.445±0.83
ENSMUST00000169982 N/A 0.670±0.27 0.228±0.00 0.516±0.17 0.499±0.00 0.248±0.13 N/A N/A 0.393±0.15 0.212±0.00 1.232±0.21 0.345±0.22 0.082±0.05 0.448±0.00
ENSMUSG00000085337 ENSMUST00000138207 N/A 1.037±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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