C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 50B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142188 TMEM50B 9606 - 21:33432485-33480011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000420455 TMEM50B-002 33432485-33479943 nonsense_mediated_decay
  ENST00000432504 TMEM50B-005 33465378-33479289 protein_coding
  ENST00000441128 TMEM50B-011 33450521-33468926 nonsense_mediated_decay
  ENST00000442441 TMEM50B-004 33450547-33479936 nonsense_mediated_decay
  ENST00000459909 TMEM50B-003 33468420-33479948 retained_intron
  ENST00000468874 TMEM50B-008 33436884-33449189 processed_transcript
  ENST00000470682 TMEM50B-007 33432798-33449410 processed_transcript
  ENST00000474272 TMEM50B-006 33465018-33467135 retained_intron
  ENST00000484377 TMEM50B-009 33432485-33448964 processed_transcript
  ENST00000542230 TMEM50B-001 33449135-33480011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000420455ENST00000442441ENST00000542230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000420455 N/A N/A N/A N/A N/A N/A N/A 1.329±0.00 N/A N/A N/A 5.462±0.10 N/A N/A
ENST00000442441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.949±0.00 10.790±0.00 29.098±0.00
ENST00000542230 14.217±0.00 9.603±0.00 3.256±0.00 8.324±0.54 10.058±2.65 9.865±4.82 6.884±3.99 15.150±13.05 7.018±1.11 8.823±5.49 6.670±3.86 13.218±4.35 7.830±2.45 12.886±5.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WY CIL_0003WY_0001 CGP 21:33324477-33479348
CIL_0003V2 CIL_0003V2_0001 CGP 21:33402896-33480011
CIL_00021F CIL_00021F_0001 CGP 21:33432485-33491720

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000022964 Tmem50b transmembrane protein 50B protein_coding Mus_musculus

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