C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163419 Scaf4-202 ENSMUSG00000022983 10090 - 16:90228957-90284308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163419 3.871±0.68 4.189±0.64 3.269±0.04 5.873±1.38 4.087±0.11 2.394±0.56 1.431±0.22 2.208±0.61 2.529±1.04 2.480±0.67 1.380±0.47 7.557±4.38 8.401±3.87 6.530±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MH CIL_0000MH_0003 CGP 16:90220742-90284425
CIL_0003N0 CIL_0003N0_0002 CGP 16:90228957-90499553

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286835 SCAF4-001 protein_coding Homo_sapiens 0 1596
ENST00000399804 SCAF4-002 protein_coding Homo_sapiens 0 2961
ENST00000434667 SCAF4-010 protein_coding Homo_sapiens 0 1378
ENST00000467731 SCAF4-003 retained_intron Homo_sapiens 0 1365
ENST00000472318 SCAF4-005 retained_intron Homo_sapiens 0 339
ENST00000485790 SCAF4-004 retained_intron Homo_sapiens 0 1146

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