C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039280 Scaf4-201 ENSMUSG00000022983 10090 - 16:90229156-90284425 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039280
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039280 4.672±1.38 20.345±1.77 4.790±0.49 7.534±3.00 12.904±6.45 11.581±1.47 1.895±0.61 3.854±1.67 4.606±2.58 9.478±3.43 1.183±0.17 15.383±5.11 5.804±1.73 10.737±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MH CIL_0000MH_0003 CGP 16:90220742-90284425
CIL_0003N0 CIL_0003N0_0002 CGP 16:90228957-90499553

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286835 SCAF4-001 protein_coding Homo_sapiens 0 2905
ENST00000399804 SCAF4-002 protein_coding Homo_sapiens 0 1530
ENST00000434667 SCAF4-010 protein_coding Homo_sapiens 0 2905
ENST00000467731 SCAF4-003 retained_intron Homo_sapiens 0 1738
ENST00000472318 SCAF4-005 retained_intron Homo_sapiens 0 339
ENST00000485790 SCAF4-004 retained_intron Homo_sapiens 0 1160

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