C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: activating transcription factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023027 Atf1 10090 + 15:100227819-100261244 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023769 Atf1-001 100227819-100261244 protein_coding
  ENSMUST00000163855 Atf1-006 100227871-100254448 protein_coding
  ENSMUST00000165804 Atf1-004 100232159-100252094 protein_coding
  ENSMUST00000166435 Atf1-009 100254215-100259912 protein_coding
  ENSMUST00000166809 Atf1-007 100232171-100233013 retained_intron
  ENSMUST00000168103 Atf1-003 100232751-100260123 processed_transcript
  ENSMUST00000169408 Atf1-002 100232733-100260080 nonsense_mediated_decay
  ENSMUST00000171869 Atf1-008 100228263-100232814 protein_coding
  ENSMUST00000172154 Atf1-005 100232198-100254384 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023769ENSMUST00000163855ENSMUST00000166435ENSMUST00000168103ENSMUST00000169408ENSMUST00000172154
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023769 9.073±4.11 21.288±3.89 14.212±1.66 4.260±2.11 7.298±4.79 10.030±2.10 6.835±1.08 8.507±3.85 16.892±10.93 13.249±3.17 13.025±0.73 13.751±3.31 13.433±6.25 13.495±5.84
ENSMUST00000163855 5.507±1.45 13.676±0.00 N/A N/A 4.336±0.18 N/A N/A N/A N/A N/A N/A 8.130±1.75 N/A N/A
ENSMUST00000166435 N/A N/A N/A 20.969±0.00 N/A N/A N/A N/A N/A N/A N/A 119.494±0.00 91.576±1.10 110.057±0.00
ENSMUST00000168103 6.473±1.15 14.856±4.46 N/A N/A 12.551±6.20 8.586±1.43 9.258±2.41 7.508±1.84 11.087±1.17 8.945±0.17 N/A 15.883±4.36 N/A 50.004±16.42
ENSMUST00000169408 N/A N/A N/A 3.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 15.467±1.40 17.348±0.00
ENSMUST00000172154 N/A N/A N/A N/A 5.863±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 29.809±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000062 CIL_000062_0002 CGP 15:100038664-100261244
CIL_00005M CIL_00005M_0002 CGP 15:100227819-100293053

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 ISO nucleus
GO:0005667 IDA transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0010976 IEA positive regulation of neuron projection development
GO:0014070 IEA response to organic cyclic compound
GO:0032025 IEA response to cobalt ion
GO:0032403 IEA protein complex binding
GO:0043623 IEA cellular protein complex assembly
GO:0045740 IEA positive regulation of DNA replication
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044301 atf1 activating transcription factor 1 protein_coding Danio_rerio
ENSG00000123268 ATF1 activating transcription factor 1 protein_coding Homo_sapiens

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