C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023769 Atf1-001 ENSMUSG00000023027 10090 + 15:100227819-100261244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023769 9.073±4.11 21.288±3.89 14.212±1.66 4.260±2.11 7.298±4.79 10.030±2.10 6.835±1.08 8.507±3.85 16.892±10.93 13.249±3.17 13.025±0.73 13.751±3.31 13.433±6.25 13.495±5.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000062 CIL_000062_0002 CGP 15:100038664-100261244
CIL_00005M CIL_00005M_0002 CGP 15:100227819-100293053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 ISO nucleus
GO:0005667 IDA transcription factor complex
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0010976 IEA positive regulation of neuron projection development
GO:0014070 IEA response to organic cyclic compound
GO:0032025 IEA response to cobalt ion
GO:0032403 IEA protein complex binding
GO:0043623 IEA cellular protein complex assembly
GO:0045740 IEA positive regulation of DNA replication
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262053 ATF1-001 protein_coding Homo_sapiens 0 953
ENST00000549612 ATF1-005 nonsense_mediated_decay Homo_sapiens 1e-35 154
ENST00000551831 ATF1-002 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000552487 ATF1-004 protein_coding Homo_sapiens 0 667
ENST00000552510 ATF1-003 protein_coding Homo_sapiens 0 588

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