C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium binding and coiled coil domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023818 Calcoco1-001 ENSMUSG00000023055 10090 - 15:102706779-102722178 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023818
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023818 21.293±0.63 30.386±2.65 15.403±2.72 10.956±0.61 16.599±3.65 9.748±0.64 29.710±7.42 20.993±1.29 6.184±2.31 27.073±7.28 27.059±1.80 24.337±5.41 10.736±6.99 4.486±1.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_00003I CIL_00003I_0002 CGP 15:102662864-102722178
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00033H CIL_00033H_0004 CGP 15:102706779-102928814

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003682 IDA chromatin binding
GO:0003712 IEA transcription cofactor activity
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0007165 IDA signal transduction
GO:0008013 IEA beta-catenin binding
GO:0008022 IEA protein C-terminus binding
GO:0016055 IEA Wnt signaling pathway
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 IDA intracellular steroid hormone receptor signaling pathway
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0070016 IEA armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262059 CALCOCO1-004 protein_coding Homo_sapiens 0 2603
ENST00000430117 CALCOCO1-006 protein_coding Homo_sapiens 0 1280
ENST00000546443 CALCOCO1-011 protein_coding Homo_sapiens 0 507
ENST00000546619 CALCOCO1-027 protein_coding Homo_sapiens 0 701
ENST00000546774 CALCOCO1-018 retained_intron Homo_sapiens 0 283
ENST00000547885 CALCOCO1-019 processed_transcript Homo_sapiens 0 409
ENST00000547949 CALCOCO1-021 processed_transcript Homo_sapiens 0 597
ENST00000547988 CALCOCO1-005 retained_intron Homo_sapiens 0 726
ENST00000548177 CALCOCO1-016 protein_coding Homo_sapiens 0 549
ENST00000548263 CALCOCO1-003 protein_coding Homo_sapiens 0 2272
ENST00000548431 CALCOCO1-020 retained_intron Homo_sapiens 0 427
ENST00000549173 CALCOCO1-030 protein_coding Homo_sapiens 0 385
ENST00000549349 CALCOCO1-015 protein_coding Homo_sapiens 0 451
ENST00000549613 CALCOCO1-013 retained_intron Homo_sapiens 0 699
ENST00000549688 CALCOCO1-024 protein_coding Homo_sapiens 0 401
ENST00000549784 CALCOCO1-017 protein_coding Homo_sapiens 0 597
ENST00000549935 CALCOCO1-007 retained_intron Homo_sapiens 0 1836
ENST00000550804 CALCOCO1-001 protein_coding Homo_sapiens 0 2501
ENST00000551900 CALCOCO1-028 protein_coding Homo_sapiens 0 708
ENST00000552282 CALCOCO1-022 retained_intron Homo_sapiens 0 457
ENST00000552623 CALCOCO1-025 protein_coding Homo_sapiens 0 475
ENST00000553154 CALCOCO1-026 retained_intron Homo_sapiens 0 667

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