C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peripherin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023484 Prph 10090 + 15:99055174-99058978 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024249 Prph-201 99055174-99058978 protein_coding
  ENSMUST00000047104 Prph-202 99055174-99058978 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024249ENSMUST00000047104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024249 0.104±0.02 2.187±1.68 2.277±0.42 7.179±4.60 0.211±0.10 6.172±1.03 0.325±0.13 1.090±0.48 0.126±0.08 0.333±0.10 0.178±0.08 1.583±0.68 1.676±2.44 0.135±0.05
ENSMUST00000047104 N/A N/A N/A 1.294±0.52 0.150±0.00 1.298±0.23 0.264±0.17 N/A N/A 0.218±0.00 0.212±0.04 0.699±0.28 2.045±2.03 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0002 CGP 15:99029891-99058978
CIL_00009Q CIL_00009Q_0002 CGP 15:99055174-99083407

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005882 IDA intermediate filament
GO:0005883 IDA neurofilament
GO:0016020 IEA membrane
GO:0030424 IDA axon
GO:0042622 IDA photoreceptor outer segment membrane
GO:0043025 ISO neuronal cell body
GO:0044299 IDA C-fiber
GO:0045098 IEA type III intermediate filament
GO:0045104 IDA intermediate filament cytoskeleton organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028306 prph peripherin protein_coding Danio_rerio
ENSG00000135406 PRPH peripherin protein_coding Homo_sapiens

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