C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peripherin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135406 PRPH 9606 + 12:49293252-49298686 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257860 PRPH-001 49293702-49298686 protein_coding
  ENST00000451891 PRPH-002 49295362-49297238 protein_coding
  ENST00000530631 PRPH-003 49297121-49298648 retained_intron
  ENST00000532332 PRPH-004 49297002-49298592 protein_coding
  ENST00000533401 PRPH-006 49295751-49297424 retained_intron
  ENST00000537252 PRPH-007 49295766-49296890 retained_intron
  ENST00000551194 PRPH-008 49293252-49293997 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000257860ENST00000451891ENST00000530631ENST00000532332ENST00000533401
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000257860 0.214±0.00 0.326±0.00 N/A 0.274±0.00 2.776±0.00 0.046±0.00 N/A 0.044±0.03 N/A N/A 1.076±0.00 N/A
ENST00000451891 1.543±0.00 N/A 0.334±0.21 1.697±0.12 N/A N/A N/A 0.215±0.00 N/A 0.279±0.00 N/A 28.016±0.00
ENST00000530631 1.437±0.00 1.656±0.00 0.845±0.00 1.268±0.00 1.720±0.00 N/A N/A N/A 1.155±0.00 N/A N/A 19.928±0.29
ENST00000532332 N/A N/A N/A 0.618±0.00 N/A N/A 0.305±0.00 N/A N/A N/A N/A N/A
ENST00000533401 N/A N/A N/A N/A 0.670±0.00 N/A N/A N/A N/A N/A N/A 13.118±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0001 CGP 12:49188736-49298686
CIL_00009Q CIL_00009Q_0001 CGP 12:49293252-49331731

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005882 TAS:IEA intermediate filament
GO:0005883 IEA neurofilament
GO:0016020 IDA membrane
GO:0030424 IEA axon
GO:0042622 IEA photoreceptor outer segment membrane
GO:0044299 IEA C-fiber
GO:0045098 IEA type III intermediate filament
GO:0045104 IEA intermediate filament cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028306 prph peripherin protein_coding Danio_rerio
ENSMUSG00000023484 Prph peripherin protein_coding Mus_musculus

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