C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripherin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024249 Prph-201 ENSMUSG00000023484 10090 + 15:99055174-99058978 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024249
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024249 0.104±0.02 2.187±1.68 2.277±0.42 7.179±4.60 0.211±0.10 6.172±1.03 0.325±0.13 1.090±0.48 0.126±0.08 0.333±0.10 0.178±0.08 1.583±0.68 1.676±2.44 0.135±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0002 CGP 15:99029891-99058978
CIL_00009Q CIL_00009Q_0002 CGP 15:99055174-99083407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005882 IDA intermediate filament
GO:0005883 IDA neurofilament
GO:0030424 IDA axon
GO:0042622 IDA photoreceptor outer segment membrane
GO:0043025 ISO neuronal cell body
GO:0044299 IDA C-fiber
GO:0045098 IEA type III intermediate filament
GO:0045104 IDA intermediate filament cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257860 PRPH-001 protein_coding Homo_sapiens 0 1759
ENST00000451891 PRPH-002 protein_coding Homo_sapiens 0 688
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 4e-23 113
ENST00000530631 PRPH-003 retained_intron Homo_sapiens 0 623
ENST00000532332 PRPH-004 protein_coding Homo_sapiens 0 695
ENST00000533401 PRPH-006 retained_intron Homo_sapiens 0 647
ENST00000537252 PRPH-007 retained_intron Homo_sapiens 0 219

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