C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripherin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047104 Prph-202 ENSMUSG00000023484 10090 + 15:99055174-99058978 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMuscleOvaryPlacentaTestisENSMUST00000047104
Transcript ID Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000047104 1.294±0.52 0.150±0.00 1.298±0.23 0.264±0.17 0.218±0.00 0.212±0.04 0.699±0.28 2.045±2.03 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0002 CGP 15:99029891-99058978
CIL_00009Q CIL_00009Q_0002 CGP 15:99055174-99083407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005882 IDA intermediate filament
GO:0005883 IDA neurofilament
GO:0016020 IEA membrane
GO:0030424 IDA axon
GO:0042622 IDA photoreceptor outer segment membrane
GO:0043025 ISO neuronal cell body
GO:0044299 IDA C-fiber
GO:0045098 IEA type III intermediate filament
GO:0045104 IDA intermediate filament cytoskeleton organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257860 PRPH-001 protein_coding Homo_sapiens 0 1138
ENST00000451891 PRPH-002 protein_coding Homo_sapiens 0 579
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 4e-23 113
ENST00000530631 PRPH-003 retained_intron Homo_sapiens 0 628
ENST00000532332 PRPH-004 protein_coding Homo_sapiens 0 641
ENST00000533401 PRPH-006 retained_intron Homo_sapiens 0 420
ENST00000537252 PRPH-007 retained_intron Homo_sapiens 0 219

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