C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FYVE, RhoGEF and PH domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024013 Fgd2 10090 + 17:29360914-29379660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024810 Fgd2-001 29360942-29379553 protein_coding
  ENSMUST00000123989 Fgd2-002 29360914-29379660 nonsense_mediated_decay
  ENSMUST00000137644 Fgd2-005 29368967-29374984 retained_intron
  ENSMUST00000138537 Fgd2-008 29365437-29367961 retained_intron
  ENSMUST00000140918 Fgd2-006 29368979-29374364 retained_intron
  ENSMUST00000144616 Fgd2-007 29376501-29378452 processed_transcript
  ENSMUST00000145124 Fgd2-003 29360932-29365059 processed_transcript
  ENSMUST00000146800 Fgd2-004 29360942-29367006 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024810ENSMUST00000123989ENSMUST00000137644ENSMUST00000140918ENSMUST00000144616ENSMUST00000146800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024810 4.765±0.85 1.820±0.77 4.276±0.74 0.863±0.24 14.976±7.79 3.619±1.06 1.143±0.37 1.530±0.40 2.398±1.49 9.234±3.20 0.165±0.08 3.748±1.63 0.506±0.49 3.903±0.00
ENSMUST00000123989 1.340±0.00 0.462±0.05 0.710±0.12 N/A 4.010±1.14 0.931±0.08 0.284±0.00 N/A 0.573±0.26 1.837±0.12 0.140±0.00 1.202±0.00 0.196±0.03 N/A
ENSMUST00000137644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A
ENSMUST00000140918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.268±0.00
ENSMUST00000144616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.277±0.00 N/A N/A N/A
ENSMUST00000146800 3.813±0.00 N/A 2.177±0.64 N/A 8.130±2.02 N/A 0.763±0.36 N/A 1.990±0.65 N/A 0.124±0.04 1.777±0.99 0.337±0.23 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0002Y4 CIL_0002Y4_0002 CGP 17:29332072-29379660
CIL_0002Y3 CIL_0002Y3_0002 CGP 17:29360914-29496111

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0042995 IEA cell projection
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000146192 FGD2 FYVE, RhoGEF and PH domain containing 2 protein_coding Homo_sapiens

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