C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: supervillin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024236 Svil 10090 + 18:4920540-5119299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025079 Svil-201 5046575-5119288 protein_coding
  ENSMUST00000125512 Svil-012 5064472-5119291 nonsense_mediated_decay
  ENSMUST00000126977 Svil-001 4920540-5119291 protein_coding
  ENSMUST00000127297 Svil-013 5040226-5118440 protein_coding
  ENSMUST00000129543 Svil-006 5114253-5119218 retained_intron
  ENSMUST00000131210 Svil-004 4920567-5058390 retained_intron
  ENSMUST00000131609 Svil-005 5040228-5118164 nonsense_mediated_decay
  ENSMUST00000138258 Svil-003 4920705-5058306 retained_intron
  ENSMUST00000139761 Svil-011 5094381-5095516 retained_intron
  ENSMUST00000140448 Svil-008 4994618-5118610 protein_coding
  ENSMUST00000143254 Svil-002 4921726-5119299 protein_coding
  ENSMUST00000146723 Svil-010 5103675-5117021 protein_coding
  ENSMUST00000148564 Svil-009 4994936-5003076 processed_transcript
  ENSMUST00000153016 Svil-007 4993813-5046877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025079ENSMUST00000125512ENSMUST00000126977ENSMUST00000127297ENSMUST00000129543ENSMUST00000131210ENSMUST00000131609ENSMUST00000140448ENSMUST00000143254ENSMUST00000146723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025079 N/A N/A N/A N/A 6.285±0.00 N/A 19.418±0.94 N/A N/A N/A 15.961±1.55 N/A N/A 0.216±0.00
ENSMUST00000125512 6.817±2.85 2.218±0.24 26.377±0.00 1.283±0.17 7.376±1.69 3.423±0.33 13.964±3.58 2.557±0.45 2.286±0.59 8.709±1.46 13.248±2.26 5.597±0.89 2.144±0.74 0.574±0.18
ENSMUST00000126977 4.463±0.00 1.085±0.36 N/A N/A 4.183±1.61 2.517±0.98 N/A 0.616±0.00 N/A 3.324±0.45 N/A 2.924±0.00 N/A N/A
ENSMUST00000127297 5.327±0.31 0.860±0.00 19.146±0.00 N/A N/A 3.290±0.83 N/A N/A N/A N/A N/A 4.438±0.76 1.326±0.00 0.217±0.00
ENSMUST00000129543 N/A N/A N/A N/A 14.313±3.85 N/A N/A N/A 2.820±0.06 N/A N/A N/A N/A N/A
ENSMUST00000131210 N/A 2.944±0.43 N/A N/A 8.994±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131609 N/A N/A N/A 1.266±0.00 N/A N/A N/A N/A N/A N/A N/A 4.275±0.00 N/A N/A
ENSMUST00000140448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.753±2.99 N/A N/A N/A
ENSMUST00000143254 6.077±2.13 1.582±0.31 11.446±0.00 1.021±0.66 5.418±1.10 N/A N/A 2.749±0.32 2.957±0.88 7.398±2.13 N/A 8.111±0.00 4.223±0.06 N/A
ENSMUST00000146723 N/A 7.673±0.39 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061R CIL_00061R_0002 CGP 18:4634929-5119299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0007010 IEA cytoskeleton organization
GO:0007519 IEA skeletal muscle tissue development
GO:0015629 IEA actin cytoskeleton
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0043034 IEA costamere
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014651 svilb supervillin b protein_coding Danio_rerio
ENSDARG00000055075 svila supervillin a protein_coding Danio_rerio
ENSG00000197321 SVIL supervillin protein_coding Homo_sapiens

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