C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: supervillin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143254 Svil-002 ENSMUSG00000024236 10090 + 18:4921726-5119299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungOvaryPlacentaENSMUST00000143254
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000143254 6.077±2.13 1.582±0.31 11.446±0.00 1.021±0.66 5.418±1.10 2.749±0.32 2.957±0.88 7.398±2.13 8.111±0.00 4.223±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061R CIL_00061R_0002 CGP 18:4634929-5119299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0007010 IEA cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077314 svila-201 protein_coding Danio_rerio 0 451
ENSDART00000152864 svila-002 protein_coding Danio_rerio 0 451
ENSDART00000066331 svila-001 protein_coding Danio_rerio 0 438
ENSDART00000153195 svila-003 nonsense_mediated_decay Danio_rerio 8.99998e-41 174
ENST00000355867 SVIL-003 protein_coding Homo_sapiens 0 3803
ENST00000375398 SVIL-201 protein_coding Homo_sapiens 0 4015
ENST00000375400 SVIL-001 protein_coding Homo_sapiens 0 4043
ENST00000422642 SVILP1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1631
ENST00000435645 SVILP1-002 processed_transcript Homo_sapiens 0 278
ENST00000482607 SVIL-010 processed_transcript Homo_sapiens 0 350

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