C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: supervillin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126977 Svil-001 ENSMUSG00000024236 10090 + 18:4920540-5119291 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryENSMUST00000126977
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary
ENSMUST00000126977 4.463±0.00 1.085±0.36 4.183±1.61 2.517±0.98 0.616±0.00 3.324±0.45 2.924±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061R CIL_00061R_0002 CGP 18:4634929-5119299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0007010 IEA cytoskeleton organization
GO:0007519 IEA skeletal muscle tissue development
GO:0015629 IEA actin cytoskeleton
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0043034 IEA costamere
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077314 svila-201 protein_coding Danio_rerio 0 451
ENSDART00000152864 svila-002 protein_coding Danio_rerio 0 451
ENSDART00000066331 svila-001 protein_coding Danio_rerio 0 438
ENSDART00000153195 svila-003 nonsense_mediated_decay Danio_rerio 9.99995e-41 174
ENST00000355867 SVIL-003 protein_coding Homo_sapiens 0 4475
ENST00000375398 SVIL-201 protein_coding Homo_sapiens 0 3803
ENST00000375400 SVIL-001 protein_coding Homo_sapiens 0 3803
ENST00000422642 SVILP1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1631
ENST00000435645 SVILP1-002 processed_transcript Homo_sapiens 0 278
ENST00000482607 SVIL-010 processed_transcript Homo_sapiens 0 350

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