C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 3110002H16 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025276 3110002H16Rik-001 ENSMUSG00000024410 10090 + 18:12168717-12189997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025276
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025276 20.033±6.26 18.396±1.88 8.256±0.97 8.066±1.58 15.824±1.36 11.618±2.84 10.412±0.48 8.523±0.60 14.822±6.73 13.454±0.28 4.568±0.70 10.981±1.50 9.016±2.12 3.540±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WY CIL_0005WY_0002 CGP 18:12128850-12189997
CIL_0005WX CIL_0005WX_0002 CGP 18:12168717-12236400

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005765 IEA lysosomal membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269221 C18orf8-001 protein_coding Homo_sapiens 0 2292
ENST00000269228 NPC1-001 protein_coding Homo_sapiens 4.99983e-42 178
ENST00000587153 C18orf8-007 retained_intron Homo_sapiens 0 274
ENST00000587690 C18orf8-005 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000588867 NPC1-010 retained_intron Homo_sapiens 8e-17 94
ENST00000589215 C18orf8-003 nonsense_mediated_decay Homo_sapiens 0 1517
ENST00000589409 C18orf8-010 retained_intron Homo_sapiens 0 429
ENST00000589860 C18orf8-008 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000590868 C18orf8-004 protein_coding Homo_sapiens 0 1781
ENST00000590870 C18orf8-002 nonsense_mediated_decay Homo_sapiens 0 2193
ENST00000591367 C18orf8-013 processed_transcript Homo_sapiens 0 730
ENST00000592119 C18orf8-006 protein_coding Homo_sapiens 0 514
ENST00000592682 C18orf8-011 retained_intron Homo_sapiens 0 381
ENST00000593081 C18orf8-012 retained_intron Homo_sapiens 0 732
ENST00000615148 C18orf8-201 protein_coding Homo_sapiens 0 1360

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