C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 3110002H16 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139151 3110002H16Rik-004 ENSMUSG00000024410 10090 + 18:12185431-12189974 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENSMUST00000139151
Transcript ID Brain Liver
ENSMUST00000139151 2.717±0.16 4.084±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WY CIL_0005WY_0002 CGP 18:12128850-12189997
CIL_0005WX CIL_0005WX_0002 CGP 18:12168717-12236400

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269221 C18orf8-001 protein_coding Homo_sapiens 0 732
ENST00000269228 NPC1-001 protein_coding Homo_sapiens 1.99993e-41 176
ENST00000588867 NPC1-010 retained_intron Homo_sapiens 3e-16 92
ENST00000589215 C18orf8-003 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000589409 C18orf8-010 retained_intron Homo_sapiens 0 429
ENST00000590868 C18orf8-004 protein_coding Homo_sapiens 0 726
ENST00000590870 C18orf8-002 nonsense_mediated_decay Homo_sapiens 0 673
ENST00000591367 C18orf8-013 processed_transcript Homo_sapiens 0 730
ENST00000592682 C18orf8-011 retained_intron Homo_sapiens 0 381
ENST00000593081 C18orf8-012 retained_intron Homo_sapiens 0 743
ENST00000615148 C18orf8-201 protein_coding Homo_sapiens 0 276

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