C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synuclein, alpha interacting protein (synphilin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024534 Sncaip 10090 + 18:52767709-52915935 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025413 Sncaip-003 52767994-52915935 protein_coding
  ENSMUST00000115410 Sncaip-002 52767709-52915864 protein_coding
  ENSMUST00000163742 Sncaip-004 52768090-52915742 protein_coding
  ENSMUST00000177861 Sncaip-008 52837964-52915586 nonsense_mediated_decay
  ENSMUST00000178011 Sncaip-005 52768121-52915613 protein_coding
  ENSMUST00000178678 Sncaip-001 52767710-52915930 protein_coding
  ENSMUST00000178883 Sncaip-007 52837964-52915879 nonsense_mediated_decay
  ENSMUST00000179038 Sncaip-012 52768732-52838040 protein_coding
  ENSMUST00000179625 Sncaip-011 52838010-52915312 protein_coding
  ENSMUST00000179689 Sncaip-010 52838010-52915312 protein_coding
  ENSMUST00000180259 Sncaip-009 52837964-52915879 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025413ENSMUST00000115410ENSMUST00000163742ENSMUST00000177861ENSMUST00000178011ENSMUST00000178678ENSMUST00000178883ENSMUST00000179038ENSMUST00000179625ENSMUST00000179689ENSMUST00000180259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025413 0.456±0.15 N/A 0.107±0.01 6.731±3.68 0.212±0.00 0.129±0.04 N/A 0.245±0.08 0.074±0.03 0.174±0.00 0.168±0.00 0.913±0.40 0.030±0.00 1.628±0.50
ENSMUST00000115410 N/A 0.393±0.00 N/A N/A 0.610±0.02 N/A N/A 0.090±0.00 0.026±0.00 0.167±0.06 N/A 1.093±0.56 N/A N/A
ENSMUST00000163742 0.658±0.31 0.156±0.00 0.377±0.26 1.052±0.00 0.382±0.13 0.126±0.00 0.298±0.00 N/A 0.067±0.04 0.075±0.00 0.398±0.10 3.358±3.75 0.445±0.42 N/A
ENSMUST00000177861 N/A N/A N/A N/A 0.327±0.00 N/A N/A N/A 0.070±0.04 N/A N/A N/A N/A N/A
ENSMUST00000178011 0.934±0.28 0.218±0.06 0.148±0.02 1.789±0.82 0.197±0.11 0.348±0.05 0.437±0.16 0.342±0.09 0.073±0.03 0.179±0.09 0.286±0.09 0.819±0.36 0.183±0.09 3.536±1.59
ENSMUST00000178678 N/A N/A N/A 3.327±2.79 N/A N/A 0.321±0.00 N/A N/A N/A 0.353±0.00 1.046±0.00 N/A 1.101±0.14
ENSMUST00000178883 N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179038 N/A 0.421±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179625 N/A 0.410±0.00 N/A 0.459±0.00 N/A 0.214±0.00 0.171±0.00 0.209±0.06 N/A N/A 0.211±0.04 N/A 0.101±0.01 5.909±0.00
ENSMUST00000179689 0.735±0.10 0.614±0.18 N/A N/A N/A 0.451±0.19 N/A 0.419±0.16 0.128±0.02 N/A N/A 2.164±0.64 N/A N/A
ENSMUST00000180259 N/A N/A 0.195±0.05 N/A 0.289±0.00 N/A N/A N/A 0.079±0.00 N/A 0.184±0.02 2.164±0.00 0.073±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0003 CGP 18:52767709-53220860

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0031625 ISS ubiquitin protein ligase binding
GO:0042417 ISS dopamine metabolic process
GO:0042802 ISS identical protein binding
GO:0046928 ISS regulation of neurotransmitter secretion
GO:0090083 ISS regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075657 SNCAIP synuclein, alpha interacting protein protein_coding Danio_rerio
ENSG00000064692 SNCAIP synuclein, alpha interacting protein protein_coding Homo_sapiens

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