C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synuclein, alpha interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000064692 SNCAIP 9606 + 5:122311354-122464219 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261367 SNCAIP-002 122312207-122464082 protein_coding
  ENST00000261368 SNCAIP-001 122312069-122464219 protein_coding
  ENST00000379538 SNCAIP-201 122312125-122464099 protein_coding
  ENST00000395466 SNCAIP-011 122391135-122463496 nonsense_mediated_decay
  ENST00000395469 SNCAIP-009 122391135-122463496 nonsense_mediated_decay
  ENST00000414317 SNCAIP-202 122391135-122451604 protein_coding
  ENST00000504884 SNCAIP-203 122391135-122451604 protein_coding
  ENST00000506272 SNCAIP-016 122311740-122423078 protein_coding
  ENST00000508017 SNCAIP-007 122312249-122464116 nonsense_mediated_decay
  ENST00000508681 SNCAIP-017 122311760-122423032 protein_coding
  ENST00000509023 SNCAIP-006 122312237-122463780 nonsense_mediated_decay
  ENST00000509154 SNCAIP-010 122311769-122451601 protein_coding
  ENST00000509652 SNCAIP-015 122312567-122391176 protein_coding
  ENST00000510003 SNCAIP-005 122312237-122441277 retained_intron
  ENST00000510658 SNCAIP-003 122311691-122463954 nonsense_mediated_decay
  ENST00000512146 SNCAIP-008 122391135-122463496 nonsense_mediated_decay
  ENST00000512385 SNCAIP-004 122312125-122464075 nonsense_mediated_decay
  ENST00000513719 SNCAIP-013 122444156-122464054 retained_intron
  ENST00000514467 SNCAIP-019 122311354-122423142 protein_coding
  ENST00000514497 SNCAIP-018 122312183-122403797 protein_coding
  ENST00000515215 SNCAIP-012 122391135-122463496 nonsense_mediated_decay
  ENST00000542191 SNCAIP-204 122391135-122451604 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261368ENST00000379538ENST00000395469ENST00000414317ENST00000508017ENST00000509023ENST00000509154ENST00000510003ENST00000510658ENST00000512385ENST00000513719ENST00000514467ENST00000515215
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261368 N/A 2.098±0.00 0.184±0.00 0.366±0.10 0.565±0.00 0.187±0.00 N/A 0.304±0.00 N/A N/A 5.692±6.64 0.866±0.37 1.841±0.00
ENST00000379538 N/A N/A 0.670±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.967±0.00
ENST00000395469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A 2.250±0.00
ENST00000414317 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.281±0.25 N/A N/A N/A
ENST00000508017 N/A 6.454±0.00 N/A 0.542±0.00 N/A 0.211±0.00 0.401±0.00 N/A N/A N/A 6.328±0.42 0.728±0.00 N/A
ENST00000509023 N/A N/A N/A N/A 0.397±0.00 N/A N/A N/A N/A 0.178±0.00 N/A N/A N/A
ENST00000509154 0.346±0.00 N/A N/A N/A N/A 0.113±0.00 N/A N/A 0.390±0.00 N/A N/A 0.447±0.00 N/A
ENST00000510003 N/A N/A N/A N/A 0.796±0.00 0.347±0.00 0.698±0.00 0.229±0.00 0.614±0.00 N/A 1.251±0.77 N/A N/A
ENST00000510658 0.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A 2.427±0.00
ENST00000513719 N/A 3.877±0.00 N/A N/A 0.418±0.00 0.256±0.00 0.417±0.00 N/A 0.340±0.00 N/A N/A N/A N/A
ENST00000514467 N/A N/A N/A N/A N/A N/A N/A N/A 1.372±0.00 N/A N/A N/A N/A
ENST00000515215 0.254±0.00 N/A N/A N/A N/A N/A 0.554±0.00 N/A 0.850±0.00 N/A 1.319±0.00 1.396±0.00 4.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008021 TAS synaptic vesicle
GO:0008219 IEA cell death
GO:0031625 IPI ubiquitin protein ligase binding
GO:0042417 IDA dopamine metabolic process
GO:0042734 NAS presynaptic membrane
GO:0042802 IPI identical protein binding
GO:0043025 NAS neuronal cell body
GO:0046928 IDA regulation of neurotransmitter secretion
GO:0090083 IDA regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075657 SNCAIP synuclein, alpha interacting protein protein_coding Danio_rerio
ENSMUSG00000024534 Sncaip synuclein, alpha interacting protein (synphilin) protein_coding Mus_musculus

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