C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein (synphilin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178678 Sncaip-001 ENSMUSG00000024534 10090 + 18:52767710-52915930 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleOvaryTestisENSMUST00000178678
Transcript ID Brain Heart Muscle Ovary Testis
ENSMUST00000178678 3.327±2.79 0.321±0.00 0.353±0.00 1.046±0.00 1.101±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0003 CGP 18:52767709-53220860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0031625 ISS ubiquitin protein ligase binding
GO:0042417 ISS dopamine metabolic process
GO:0042802 ISS identical protein binding
GO:0046928 ISS regulation of neurotransmitter secretion
GO:0090083 ISS regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261367 SNCAIP-002 protein_coding Homo_sapiens 0 2913
ENST00000261368 SNCAIP-001 protein_coding Homo_sapiens 0 2867
ENST00000379538 SNCAIP-201 protein_coding Homo_sapiens 0 1834
ENST00000395466 SNCAIP-011 nonsense_mediated_decay Homo_sapiens 0 1825
ENST00000395469 SNCAIP-009 nonsense_mediated_decay Homo_sapiens 0 1408
ENST00000414317 SNCAIP-202 protein_coding Homo_sapiens 0 1483
ENST00000504884 SNCAIP-203 protein_coding Homo_sapiens 0 1823
ENST00000506272 SNCAIP-016 protein_coding Homo_sapiens 0 339
ENST00000508017 SNCAIP-007 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000508681 SNCAIP-017 protein_coding Homo_sapiens 0 462
ENST00000509023 SNCAIP-006 nonsense_mediated_decay Homo_sapiens 0 1485
ENST00000509154 SNCAIP-010 protein_coding Homo_sapiens 0 1633
ENST00000509652 SNCAIP-015 protein_coding Homo_sapiens 2e-27 126
ENST00000510003 SNCAIP-005 retained_intron Homo_sapiens 0 1552
ENST00000510658 SNCAIP-003 nonsense_mediated_decay Homo_sapiens 0 1482
ENST00000512146 SNCAIP-008 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000512385 SNCAIP-004 nonsense_mediated_decay Homo_sapiens 0 1834
ENST00000513719 SNCAIP-013 retained_intron Homo_sapiens 0 1321
ENST00000514467 SNCAIP-019 protein_coding Homo_sapiens 0 641
ENST00000514497 SNCAIP-018 protein_coding Homo_sapiens 4e-34 148
ENST00000515215 SNCAIP-012 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000542191 SNCAIP-204 protein_coding Homo_sapiens 0 1639

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