C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005KK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075657-ENSDARG00000053356 CGP 7955 Zv9_NA89:13918-87221
GeneTranscriptPositionBiotype
ENSDARG00000053356 (SNX2)
sorting nexin 2 		ENSDART00000075387 (SNX2-201) 53352-87221 protein_coding
ENSDARG00000075657 (SNCAIP)
synuclein, alpha interacting protein 		ENSDART00000109721 (SNCAIP-201) 13918-31536 protein_coding
CIL_0005KK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000064692-ENSG00000205302 CGP 9606 5:122311354-122830108
GeneTranscriptPositionBiotype
ENSG00000205302 (SNX2)
sorting nexin 2 		ENST00000379516 (SNX2-001) 122774996-122830108 protein_coding
ENST00000505854 (SNX2-004) 122775095-122803869 retained_intron
ENST00000505934 (SNX2-012) 122775082-122815973 protein_coding
ENST00000506847 (SNX2-009) 122816923-122829773 processed_transcript
ENST00000506874 (SNX2-003) 122775082-122775676 processed_transcript
ENST00000507321 (SNX2-007) 122827321-122829755 retained_intron
ENST00000507852 (SNX2-010) 122827434-122828046 retained_intron
ENST00000509281 (SNX2-006) 122815568-122817340 retained_intron
ENST00000510372 (SNX2-002) 122795536-122829671 processed_transcript
ENST00000511365 (SNX2-005) 122803494-122808711 retained_intron
ENST00000512394 (SNX2-013) 122775079-122817018 nonsense_mediated_decay
ENST00000514030 (SNX2-008) 122817275-122827752 retained_intron
ENST00000514949 (SNX2-011) 122775203-122829755 protein_coding
ENSG00000240058 (ARGFXP1)
arginine-fifty homeobox pseudogene 1 		ENST00000489176 (ARGFXP1-001) 122675795-122676755 processed_pseudogene
ENSG00000249621 (CTD-2544H17.1)
 ENST00000512105 (CTD-2544H17.1-001) 122321291-122323358 lincRNA
ENSG00000249916 (CTD-2280E9.1)
 ENST00000507143 (CTD-2280E9.1-001) 122369762-122383568 antisense
ENSG00000250328 (MGC32805)
uncharacterized LOC153163 		ENST00000503529 (MGC32805-003) 122437254-122479080 antisense
ENST00000505546 (MGC32805-005) 122444659-122477090 antisense
ENST00000506053 (MGC32805-002) 122436762-122469059 antisense
ENST00000509993 (MGC32805-004) 122436759-122469067 antisense
ENST00000510972 (MGC32805-001) 122436497-122479087 antisense
ENSG00000251538 (RP11-166A12.1)
 ENST00000508992 (RP11-166A12.1-002) 122729409-122730685 lincRNA
ENST00000511194 (RP11-166A12.1-001) 122628952-122730559 lincRNA
ENST00000514657 (RP11-166A12.1-003) 122699390-122705069 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0005KK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024534-ENSMUSG00000034484 CGP 10090 18:52767709-53220860
GeneTranscriptPositionBiotype
ENSMUSG00000024534 (Sncaip)
synuclein, alpha interacting protein (synphilin) 		ENSMUST00000025413 (Sncaip-003) 52767994-52915935 protein_coding
ENSMUST00000115410 (Sncaip-002) 52767709-52915864 protein_coding
ENSMUST00000163742 (Sncaip-004) 52768090-52915742 protein_coding
ENSMUST00000177861 (Sncaip-008) 52837964-52915586 nonsense_mediated_decay
ENSMUST00000178011 (Sncaip-005) 52768121-52915613 protein_coding
ENSMUST00000178678 (Sncaip-001) 52767710-52915930 protein_coding
ENSMUST00000178883 (Sncaip-007) 52837964-52915879 nonsense_mediated_decay
ENSMUST00000179038 (Sncaip-012) 52768732-52838040 protein_coding
ENSMUST00000179625 (Sncaip-011) 52838010-52915312 protein_coding
ENSMUST00000179689 (Sncaip-010) 52838010-52915312 protein_coding
ENSMUST00000180259 (Sncaip-009) 52837964-52915879 nonsense_mediated_decay
ENSMUSG00000034484 (Snx2)
sorting nexin 2 		ENSMUST00000037850 (Snx2-201) 53176365-53220860 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005KK_0001ENSDARG00000053356ENSDART00000075387ENSDARG00000075657ENSDART00000109721CIL_0005KK_0002ENSG00000205302ENST00000379516ENST00000505854ENST00000505934ENST00000506847ENST00000506874ENST00000507321ENST00000507852ENST00000509281ENST00000510372ENST00000511365ENST00000512394ENST00000514030ENST00000514949ENSG00000240058ENST00000489176ENSG00000249621ENST00000512105ENSG00000249916ENST00000507143ENSG00000250328ENST00000503529ENST00000505546ENST00000506053ENST00000509993ENST00000510972ENSG00000251538ENST00000508992ENST00000511194ENST00000514657CIL_0005KK_0003ENSMUSG00000024534ENSMUST00000025413ENSMUST00000115410ENSMUST00000163742ENSMUST00000177861ENSMUST00000178011ENSMUST00000178678ENSMUST00000178883ENSMUST00000179038ENSMUST00000179625ENSMUST00000179689ENSMUST00000180259ENSMUSG00000034484ENSMUST00000037850
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005KK_0001ENSDARG00000053356ENSDART00000075387ENSDARG00000075657ENSDART00000109721CIL_0005KK_0002ENSG00000205302ENST00000379516ENST00000505854ENST00000505934ENST00000506847ENST00000510372ENST00000514030ENSG00000240058ENST00000489176ENSG00000249621ENST00000512105ENSG00000249916ENST00000507143ENSG00000250328ENST00000503529ENST00000510972ENSG00000251538ENST00000508992ENST00000511194ENST00000514657CIL_0005KK_0003ENSMUSG00000024534ENSMUST00000025413ENSMUST00000115410ENSMUST00000163742ENSMUST00000177861ENSMUST00000178011ENSMUST00000178678ENSMUST00000178883ENSMUST00000179038ENSMUST00000179625ENSMUST00000179689ENSMUST00000180259ENSMUSG00000034484ENSMUST00000037850
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053356 ENSDART00000075387 N/A N/A N/A 4.288±3.10 N/A N/A 4.262±2.67 N/A 0.850±0.00 N/A 1.891±0.00 N/A N/A N/A
ENSDARG00000075657 ENSDART00000109721 N/A N/A N/A 4.856±0.00 N/A N/A 0.510±0.00 N/A 0.048±0.00 N/A 0.470±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000205302 ENST00000379516 13.703±0.00 16.249±0.00 1.902±0.00 5.716±1.84 8.852±6.87 7.106±5.87 4.006±2.55 9.645±7.65 7.071±0.67 6.453±1.79 3.516±2.27 12.038±10.60 16.404±2.44 10.902±4.48
ENST00000505854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.544±0.00 N/A N/A N/A
ENST00000505934 N/A N/A 2.501±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506847 N/A 12.080±0.00 N/A 2.670±0.00 N/A 8.191±0.00 N/A 10.159±0.00 4.072±0.00 9.655±0.00 9.211±0.00 N/A N/A 12.674±0.00
ENST00000506874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510372 8.860±0.00 11.202±0.00 N/A 2.727±1.20 10.108±0.00 10.018±0.00 5.508±0.00 8.458±0.00 3.080±0.00 7.220±1.28 8.740±0.00 4.187±1.46 11.658±7.09 12.553±0.27
ENST00000511365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514030 N/A N/A N/A 7.773±0.00 4.677±0.00 2.583±0.00 N/A 5.369±0.00 8.861±0.00 9.183±0.00 1.868±0.00 N/A N/A N/A
ENST00000514949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240058 ENST00000489176 N/A N/A N/A 0.051±0.00 N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000249621 ENST00000512105 N/A N/A N/A N/A 0.311±0.00 N/A 0.047±0.00 0.078±0.00 N/A 0.540±0.00 N/A N/A N/A 0.182±0.04
ENSG00000249916 ENST00000507143 N/A N/A N/A 0.206±0.00 N/A N/A 0.046±0.00 N/A 0.042±0.00 0.055±0.00 N/A 0.068±0.01 N/A N/A
ENSG00000250328 ENST00000503529 N/A N/A N/A N/A N/A N/A N/A N/A 0.773±0.25 N/A N/A N/A N/A N/A
ENST00000505546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510972 N/A N/A N/A N/A N/A N/A N/A N/A 0.475±0.00 N/A N/A N/A N/A N/A
ENSG00000251538 ENST00000508992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00
ENST00000511194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 0.023±0.00 0.013±0.00
ENST00000514657 N/A 0.071±0.00 N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024534 ENSMUST00000025413 0.456±0.15 N/A 0.107±0.01 6.731±3.68 0.212±0.00 0.129±0.04 N/A 0.245±0.08 0.074±0.03 0.174±0.00 0.168±0.00 0.913±0.40 0.030±0.00 1.628±0.50
ENSMUST00000115410 N/A 0.393±0.00 N/A N/A 0.610±0.02 N/A N/A 0.090±0.00 0.026±0.00 0.167±0.06 N/A 1.093±0.56 N/A N/A
ENSMUST00000163742 0.658±0.31 0.156±0.00 0.377±0.26 1.052±0.00 0.382±0.13 0.126±0.00 0.298±0.00 N/A 0.067±0.04 0.075±0.00 0.398±0.10 3.358±3.75 0.445±0.42 N/A
ENSMUST00000177861 N/A N/A N/A N/A 0.327±0.00 N/A N/A N/A 0.070±0.04 N/A N/A N/A N/A N/A
ENSMUST00000178011 0.934±0.28 0.218±0.06 0.148±0.02 1.789±0.82 0.197±0.11 0.348±0.05 0.437±0.16 0.342±0.09 0.073±0.03 0.179±0.09 0.286±0.09 0.819±0.36 0.183±0.09 3.536±1.59
ENSMUST00000178678 N/A N/A N/A 3.327±2.79 N/A N/A 0.321±0.00 N/A N/A N/A 0.353±0.00 1.046±0.00 N/A 1.101±0.14
ENSMUST00000178883 N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179038 N/A 0.421±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179625 N/A 0.410±0.00 N/A 0.459±0.00 N/A 0.214±0.00 0.171±0.00 0.209±0.06 N/A N/A 0.211±0.04 N/A 0.101±0.01 5.909±0.00
ENSMUST00000179689 0.735±0.10 0.614±0.18 N/A N/A N/A 0.451±0.19 N/A 0.419±0.16 0.128±0.02 N/A N/A 2.164±0.64 N/A N/A
ENSMUST00000180259 N/A N/A 0.195±0.05 N/A 0.289±0.00 N/A N/A N/A 0.079±0.00 N/A 0.184±0.02 2.164±0.00 0.073±0.00 N/A
ENSMUSG00000034484 ENSMUST00000037850 20.039±3.31 11.724±3.20 44.531±1.02 10.691±6.99 22.478±3.04 12.984±4.13 7.649±0.44 15.624±2.26 24.137±14.03 18.707±2.38 7.000±1.17 16.876±8.74 55.303±9.67 5.109±0.52

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