C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein (synphilin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180259 Sncaip-009 ENSMUSG00000024534 10090 + 18:52837964-52915879 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLiverMuscleOvaryPlacentaENSMUST00000180259
Transcript ID Bladder Breast Liver Muscle Ovary Placenta
ENSMUST00000180259 0.195±0.05 0.289±0.00 0.079±0.00 0.184±0.02 2.164±0.00 0.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0003 CGP 18:52767709-53220860

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261367 SNCAIP-002 protein_coding Homo_sapiens 0 1639
ENST00000261368 SNCAIP-001 protein_coding Homo_sapiens 0 1786
ENST00000379538 SNCAIP-201 protein_coding Homo_sapiens 0 1871
ENST00000395466 SNCAIP-011 nonsense_mediated_decay Homo_sapiens 0 1646
ENST00000395469 SNCAIP-009 nonsense_mediated_decay Homo_sapiens 0 1328
ENST00000414317 SNCAIP-202 protein_coding Homo_sapiens 0 1483
ENST00000504884 SNCAIP-203 protein_coding Homo_sapiens 0 1637
ENST00000506272 SNCAIP-016 protein_coding Homo_sapiens 2e-33 147
ENST00000508017 SNCAIP-007 nonsense_mediated_decay Homo_sapiens 0 2019
ENST00000508681 SNCAIP-017 protein_coding Homo_sapiens 0 237
ENST00000509023 SNCAIP-006 nonsense_mediated_decay Homo_sapiens 0 1633
ENST00000509154 SNCAIP-010 protein_coding Homo_sapiens 0 1633
ENST00000509652 SNCAIP-015 protein_coding Homo_sapiens 7e-27 124
ENST00000510003 SNCAIP-005 retained_intron Homo_sapiens 0 326
ENST00000510658 SNCAIP-003 nonsense_mediated_decay Homo_sapiens 0 1629
ENST00000512146 SNCAIP-008 nonsense_mediated_decay Homo_sapiens 0 1733
ENST00000512385 SNCAIP-004 nonsense_mediated_decay Homo_sapiens 0 1871
ENST00000513719 SNCAIP-013 retained_intron Homo_sapiens 0 1469
ENST00000514467 SNCAIP-019 protein_coding Homo_sapiens 0 237
ENST00000514497 SNCAIP-018 protein_coding Homo_sapiens 1e-33 147
ENST00000515215 SNCAIP-012 nonsense_mediated_decay Homo_sapiens 0 1827
ENST00000542191 SNCAIP-204 protein_coding Homo_sapiens 0 1724

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