C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sal-like 3 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024565 Sall3 10090 - 18:80966376-80986578 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057950 Sall3-201 80966376-80986578 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057950
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057950 0.009±0.01 0.066±0.02 3.207±2.38 0.012±0.01 0.012±0.01 0.706±0.12 0.005±0.01 0.012±0.01 0.007±0.00 0.029±0.02 0.054±0.03 0.734±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HP CIL_0008HP_0002 VISTA 18:80487642-81088565
CIL_0008IX CIL_0008IX_0002 VISTA 18:80511437-81112175
CIL_0008KF CIL_0008KF_0002 VISTA 18:80518312-81119092
CIL_0007MA CIL_0007MA_0004 UCNEbase 18:80787700-81852865
CIL_00094I CIL_00094I_0002 VISTA 18:80831478-81432546
CIL_0008XA CIL_0008XA_0002 VISTA 18:80852972-81454539
CIL_0007YX CIL_0007YX_0002 VISTA 18:80865710-81467180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021891 IMP olfactory bulb interneuron development
GO:0035136 IGI forelimb morphogenesis
GO:0035137 IGI hindlimb morphogenesis
GO:0045879 IGI negative regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057586 sall3b sal-like 3b (Drosophila) protein_coding Danio_rerio
ENSDARG00000079613 sall3a sal-like 3a (Drosophila) protein_coding Danio_rerio
ENSG00000256463 SALL3 spalt-like transcription factor 3 protein_coding Homo_sapiens

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