C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spalt-like transcription factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000256463 SALL3 9606 + 18:78980275-79002677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000536229 SALL3-006 78991682-78997322 protein_coding
  ENST00000537592 SALL3-001 78980275-78999974 protein_coding
  ENST00000572928 SALL3-004 78985010-78992162 processed_transcript
  ENST00000573324 SALL3-003 78994798-79002677 protein_coding
  ENST00000575389 SALL3-002 78980275-78997631 protein_coding
  ENST00000616649 SALL3-201 78980275-78997397 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverMusclePlacentaTestisENST00000537592ENST00000573324ENST00000575389ENST00000616649
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Placenta Testis
ENST00000537592 0.023±0.00 N/A 0.105±0.00 0.003±0.00 N/A N/A 0.182±0.00 0.033±0.00 N/A 0.018±0.00 N/A
ENST00000573324 N/A N/A 1.176±0.00 N/A N/A N/A N/A 0.094±0.00 0.086±0.00 N/A 0.624±0.00
ENST00000575389 N/A 0.456±0.00 N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A
ENST00000616649 0.029±0.00 N/A 0.636±0.00 N/A 0.030±0.00 0.064±0.00 N/A N/A N/A N/A 0.287±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000018 CIL_000018_0002 CGP 18:77250549-79002677
CIL_0007MA CIL_0007MA_0003 UCNEbase 18:78027502-79284092
CIL_0007YX CIL_0007YX_0001 VISTA 18:78401276-79002723
CIL_0008XA CIL_0008XA_0001 VISTA 18:78421722-79023257
CIL_00094I CIL_00094I_0001 VISTA 18:78457730-79058836
CIL_0008KF CIL_0008KF_0001 VISTA 18:78942193-79542977
CIL_0008IX CIL_0008IX_0001 VISTA 18:78950009-79550795
CIL_000015 CIL_000015_0002 CGP 18:78980275-79378283

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021891 IEA olfactory bulb interneuron development
GO:0035136 IEA forelimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0045879 IEA negative regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057586 sall3b sal-like 3b (Drosophila) protein_coding Danio_rerio
ENSDARG00000079613 sall3a sal-like 3a (Drosophila) protein_coding Danio_rerio
ENSMUSG00000024565 Sall3 sal-like 3 (Drosophila) protein_coding Mus_musculus

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