C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: casein kinase 1, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024576 Csnk1a1 10090 + 18:61555274-61590061 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115246 Csnk1a1-003 61555318-61582116 protein_coding
  ENSMUST00000163205 Csnk1a1-005 61555328-61582262 protein_coding
  ENSMUST00000164253 Csnk1a1-010 61575517-61582118 protein_coding
  ENSMUST00000165123 Csnk1a1-001 61555274-61590061 protein_coding
  ENSMUST00000165381 Csnk1a1-006 61555335-61558238 retained_intron
  ENSMUST00000165721 Csnk1a1-002 61555313-61588304 protein_coding
  ENSMUST00000166990 Csnk1a1-004 61555318-61585631 protein_coding
  ENSMUST00000167187 Csnk1a1-009 61555689-61587531 protein_coding
  ENSMUST00000170482 Csnk1a1-008 61582844-61586498 processed_transcript
  ENSMUST00000170862 Csnk1a1-007 61555339-61588182 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115246ENSMUST00000163205ENSMUST00000165123ENSMUST00000165721ENSMUST00000167187ENSMUST00000170482ENSMUST00000170862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115246 N/A 51.758±16.26 N/A N/A 47.862±4.46 26.216±3.97 N/A 12.967±0.00 6.155±0.82 29.762±8.05 N/A 26.393±6.13 N/A 86.459±20.60
ENSMUST00000163205 11.119±0.00 N/A N/A N/A 6.589±0.57 N/A N/A N/A N/A 11.792±0.00 N/A 7.513±1.89 N/A N/A
ENSMUST00000165123 27.515±8.25 14.878±5.09 44.211±3.46 48.350±4.38 19.968±2.67 19.555±1.76 19.235±2.97 16.131±1.76 18.612±7.79 27.103±3.25 33.052±3.97 20.467±7.18 32.301±5.64 8.041±0.89
ENSMUST00000165721 13.092±0.00 N/A 26.852±0.10 22.528±4.04 N/A 10.742±0.00 11.567±0.86 7.841±1.34 16.250±2.68 N/A N/A 26.556±2.36 44.310±17.18 N/A
ENSMUST00000167187 N/A N/A N/A 54.465±0.00 N/A N/A N/A N/A N/A N/A N/A 49.338±0.00 74.966±0.00 43.745±0.00
ENSMUST00000170482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.651±1.39 N/A N/A
ENSMUST00000170862 17.088±6.28 N/A N/A N/A N/A 10.865±0.73 N/A N/A 4.725±0.00 14.547±3.20 15.365±1.15 17.781±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000851 CIL_000851_0002 VISTA 18:61337492-61938739
CIL_0007ZC CIL_0007ZC_0002 VISTA 18:61351102-61954077

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0000902 IGI cell morphogenesis
GO:0004672 IDA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0005856 IEA cytoskeleton
GO:0006468 IEA protein phosphorylation
GO:0007067 IEA mitotic nuclear division
GO:0016055 IEA Wnt signaling pathway
GO:0016607 ISS nuclear speck
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007993 csnk1a1 casein kinase 1, alpha 1 protein_coding Danio_rerio
ENSDARG00000052674 csnk1a1 casein kinase 1, alpha 1 protein_coding Danio_rerio
ENSG00000180138 CSNK1A1L casein kinase 1, alpha 1-like protein_coding Homo_sapiens

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