C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: casein kinase 1, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165721 Csnk1a1-002 ENSMUSG00000024576 10090 + 18:61555313-61588304 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverOvaryPlacentaENSMUST00000165721
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000165721 13.092±0.00 26.852±0.10 22.528±4.04 10.742±0.00 11.567±0.86 7.841±1.34 16.250±2.68 26.556±2.36 44.310±17.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000851 CIL_000851_0002 VISTA 18:61337492-61938739
CIL_0007ZC CIL_0007ZC_0002 VISTA 18:61351102-61954077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0000902 IGI cell morphogenesis
GO:0004672 IDA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0005856 IEA cytoskeleton
GO:0006468 IEA:IDA protein phosphorylation
GO:0007067 IEA mitotic nuclear division
GO:0016055 IEA Wnt signaling pathway
GO:0016607 ISS nuclear speck
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130655 csnk1a1-204 protein_coding Danio_rerio 0 977
ENSDART00000052520 csnk1a1-202 protein_coding Danio_rerio 0 977
ENSDART00000121429 csnk1a1-203 protein_coding Danio_rerio 0 621
ENSDART00000009443 csnk1a1-201 protein_coding Danio_rerio 0 621
ENST00000261798 CSNK1A1-001 protein_coding Homo_sapiens 0 1755
ENST00000377843 CSNK1A1-201 protein_coding Homo_sapiens 0 3046
ENST00000379800 CSNK1A1L-001 protein_coding Homo_sapiens 0 1989
ENST00000412431 CSNK1A1-202 protein_coding Homo_sapiens 0 1031
ENST00000430593 CSNK1A1P1-002 processed_transcript Homo_sapiens 0 401
ENST00000503350 CSNK1A1-006 protein_coding Homo_sapiens 0 809
ENST00000504105 CSNK1A1P3-001 processed_pseudogene Homo_sapiens 0 318
ENST00000504676 CSNK1A1-002 protein_coding Homo_sapiens 0 1365
ENST00000515435 CSNK1A1-004 protein_coding Homo_sapiens 0 1110
ENST00000515748 CSNK1A1-005 protein_coding Homo_sapiens 0 396
ENST00000515768 CSNK1A1-003 protein_coding Homo_sapiens 0 918
ENST00000523203 CSNK1A1-007 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000546014 AP000619.6-001 processed_pseudogene Homo_sapiens 0 1037
ENST00000563423 CSNK1A1P1-001 transcribed_processed_pseudogene Homo_sapiens 0 1146
ENST00000606299 CSNK1A1-009 protein_coding Homo_sapiens 0 544
ENST00000606719 CSNK1A1-008 protein_coding Homo_sapiens 0 1249
ENST00000606826 CSNK1A1-010 nonsense_mediated_decay Homo_sapiens 0 737

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