C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synovial apoptosis inhibitor 1, synoviolin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024807 Syvn1 10090 + 19:6046576-6053712 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025723 Syvn1-004 6047104-6053709 protein_coding
  ENSMUST00000129081 Syvn1-006 6046638-6049203 protein_coding
  ENSMUST00000134667 Syvn1-002 6047080-6053709 protein_coding
  ENSMUST00000138532 Syvn1-001 6046576-6053712 protein_coding
  ENSMUST00000142101 Syvn1-003 6047065-6053711 retained_intron
  ENSMUST00000144328 Syvn1-007 6047085-6049651 retained_intron
  ENSMUST00000156550 Syvn1-005 6046662-6053709 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025723ENSMUST00000134667ENSMUST00000138532ENSMUST00000142101ENSMUST00000156550
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025723 N/A N/A N/A N/A 5.380±0.00 N/A N/A N/A N/A N/A 1.811±0.00 N/A 18.885±0.88 N/A
ENSMUST00000134667 9.703±3.77 N/A N/A 4.125±0.00 8.984±3.79 N/A 1.858±0.00 N/A N/A 2.687±0.10 3.738±1.06 8.212±4.74 16.113±3.80 2.037±1.22
ENSMUST00000138532 10.459±2.73 37.630±5.86 7.769±0.75 7.194±3.40 15.069±5.54 21.372±2.43 4.919±1.89 10.592±0.36 12.338±4.33 12.559±1.56 3.513±1.09 17.257±3.95 11.130±3.49 10.221±0.77
ENSMUST00000142101 3.087±0.23 N/A N/A N/A 4.147±1.60 5.149±0.94 N/A N/A 5.539±0.92 2.403±0.24 N/A 4.071±0.51 N/A 2.076±0.17
ENSMUST00000156550 N/A N/A N/A N/A N/A N/A 1.917±0.00 N/A 3.815±0.57 N/A N/A 5.103±0.17 9.145±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698
CIL_0002MM CIL_0002MM_0002 CGP 19:6046576-6057751

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 ISO ubiquitin ligase complex
GO:0001701 IMP in utero embryonic development
GO:0004842 ISO ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 ISO endoplasmic reticulum
GO:0006986 ISO response to unfolded protein
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016567 ISO protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0018279 ISS protein N-linked glycosylation via asparagine
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:1902236 IMP negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017842 syvn1 synovial apoptosis inhibitor 1, synoviolin protein_coding Danio_rerio
ENSG00000162298 SYVN1 synovial apoptosis inhibitor 1, synoviolin protein_coding Homo_sapiens

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