C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ligand dependent nuclear receptor corepressor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025019 Lcor 10090 + 19:41482645-41562246 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067795 Lcor-201 41482645-41562246 protein_coding
  ENSMUST00000163929 Lcor-202 41549639-41559781 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067795ENSMUST00000163929
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067795 0.953±0.39 1.419±0.22 0.972±0.00 1.986±0.54 2.147±0.25 0.997±0.21 1.415±0.43 1.464±0.39 2.127±0.16 0.284±0.01 1.998±0.42 2.898±0.54 0.419±0.12
ENSMUST00000163929 N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A N/A N/A 0.309±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SO CIL_0008SO_0002 VISTA 19:41258217-41859329
CIL_0003GA CIL_0003GA_0002 CGP 19:41274218-41562246
CIL_0005ID CIL_0005ID_0002 CGP 19:41482645-41586536

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008134 IPI transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070907 lcor ligand dependent nuclear receptor corepressor protein_coding Danio_rerio
ENSG00000196233 LCOR ligand dependent nuclear receptor corepressor protein_coding Homo_sapiens

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