C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand dependent nuclear receptor corepressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067795 Lcor-201 ENSMUSG00000025019 10090 + 19:41482645-41562246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067795
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067795 0.953±0.39 1.419±0.22 0.972±0.00 1.986±0.54 2.147±0.25 0.997±0.21 1.415±0.43 1.464±0.39 2.127±0.16 0.284±0.01 1.998±0.42 2.898±0.54 0.419±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SO CIL_0008SO_0002 VISTA 19:41258217-41859329
CIL_0003GA CIL_0003GA_0002 CGP 19:41274218-41562246
CIL_0005ID CIL_0005ID_0002 CGP 19:41482645-41586536

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008134 IPI transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356016 LCOR-010 protein_coding Homo_sapiens 0 3513
ENST00000371097 LCOR-009 protein_coding Homo_sapiens 0 3511
ENST00000371103 LCOR-015 protein_coding Homo_sapiens 0 3718
ENST00000463415 LCOR-012 processed_transcript Homo_sapiens 0 265
ENST00000469510 LCOR-013 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000493486 LCOR-011 processed_transcript Homo_sapiens 0 217
ENST00000498444 LCOR-014 processed_transcript Homo_sapiens 0 409
ENST00000540664 LCOR-201 protein_coding Homo_sapiens 0 2900

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