C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin-binding LIM protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025085 Ablim1 10090 - 19:57032733-57314919 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079360 Ablim1-004 57032733-57216032 protein_coding
  ENSMUST00000099294 Ablim1-001 57033274-57197631 protein_coding
  ENSMUST00000104902 Ablim1-201 57033267-57119009 protein_coding
  ENSMUST00000111524 Ablim1-006 57130606-57314911 protein_coding
  ENSMUST00000111526 Ablim1-019 57036479-57118913 protein_coding
  ENSMUST00000111528 Ablim1-015 57036418-57119007 protein_coding
  ENSMUST00000111529 Ablim1-013 57032890-57119009 protein_coding
  ENSMUST00000111544 Ablim1-002 57037182-57197496 protein_coding
  ENSMUST00000111546 Ablim1-016 57037140-57197391 protein_coding
  ENSMUST00000111550 Ablim1-017 57036684-57197456 protein_coding
  ENSMUST00000111555 Ablim1-018 57037004-57215965 protein_coding
  ENSMUST00000111558 Ablim1-020 57036966-57239861 protein_coding
  ENSMUST00000111559 Ablim1-008 57036283-57239329 protein_coding
  ENSMUST00000127198 Ablim1-012 57041054-57044942 retained_intron
  ENSMUST00000128212 Ablim1-005 57130264-57135725 processed_transcript
  ENSMUST00000133369 Ablim1-009 57130846-57182308 protein_coding
  ENSMUST00000133782 Ablim1-007 57060964-57134708 retained_intron
  ENSMUST00000134430 Ablim1-010 57077302-57134677 processed_transcript
  ENSMUST00000137389 Ablim1-011 57039447-57047238 processed_transcript
  ENSMUST00000150425 Ablim1-014 57116022-57119024 processed_transcript
  ENSMUST00000156316 Ablim1-003 57037251-57314919 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000099294ENSMUST00000104902ENSMUST00000111524ENSMUST00000111526ENSMUST00000111528ENSMUST00000111529ENSMUST00000111544ENSMUST00000111550ENSMUST00000133369
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000099294 5.225±0.00 N/A N/A 4.381±1.03 N/A N/A 13.345±3.62 N/A 1.400±0.00 1.783±0.20 2.112±0.00 1.336±0.61 0.133±0.06
ENSMUST00000104902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.174±0.00 0.495±0.00 N/A
ENSMUST00000111524 N/A 8.243±1.19 N/A N/A 23.890±5.32 10.406±1.89 N/A N/A N/A N/A 10.950±0.00 N/A N/A
ENSMUST00000111526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.601±0.00 2.461±1.10 N/A
ENSMUST00000111528 N/A N/A N/A N/A N/A 3.996±0.33 N/A N/A N/A N/A 9.615±1.98 N/A N/A
ENSMUST00000111529 8.521±4.41 3.099±0.82 3.162±0.03 1.518±0.42 23.301±4.36 9.351±2.13 N/A 2.521±0.15 1.388±0.85 1.312±0.00 18.139±5.42 2.983±1.34 0.442±0.09
ENSMUST00000111544 8.431±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.337±0.00 0.664±0.00
ENSMUST00000111550 N/A N/A N/A N/A N/A N/A 16.868±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000133369 N/A N/A N/A N/A N/A N/A N/A N/A 4.298±0.00 N/A N/A N/A 1.512±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OJ CIL_0002OJ_0002 CGP 19:56912361-57314919
CIL_0001R6 CIL_0001R6_0003 CGP 19:57032733-57389594

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0003779 IDA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007010 IEA cytoskeleton organization
GO:0007411 IDA axon guidance
GO:0008270 IEA zinc ion binding
GO:0015629 IDA actin cytoskeleton
GO:0030027 ISO lamellipodium
GO:0030032 ISO lamellipodium assembly
GO:0042384 ISO cilium assembly
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045064 ablim1b actin binding LIM protein 1b protein_coding Danio_rerio
ENSDARG00000060149 ablim1a actin binding LIM protein 1a protein_coding Danio_rerio
ENSG00000099204 ABLIM1 actin binding LIM protein 1 protein_coding Homo_sapiens

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