C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-binding LIM protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111529 Ablim1-013 ENSMUSG00000025085 10090 - 19:57032890-57119009 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000111529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000111529 8.521±4.41 3.099±0.82 3.162±0.03 1.518±0.42 23.301±4.36 9.351±2.13 2.521±0.15 1.388±0.85 1.312±0.00 18.139±5.42 2.983±1.34 0.442±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OJ CIL_0002OJ_0002 CGP 19:56912361-57314919
CIL_0001R6 CIL_0001R6_0003 CGP 19:57032733-57389594

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0003779 IDA actin binding
GO:0007010 IEA cytoskeleton organization
GO:0007411 IDA axon guidance
GO:0015629 IDA actin cytoskeleton
GO:0030027 ISO lamellipodium
GO:0030032 ISO lamellipodium assembly
GO:0042384 ISO cilium assembly
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277895 ABLIM1-001 protein_coding Homo_sapiens 0 1057
ENST00000369252 ABLIM1-201 protein_coding Homo_sapiens 0 1072
ENST00000369253 ABLIM1-010 protein_coding Homo_sapiens 0 1504
ENST00000369256 ABLIM1-005 protein_coding Homo_sapiens 0 1050
ENST00000369266 ABLIM1-202 protein_coding Homo_sapiens 0 1498
ENST00000392952 ABLIM1-009 protein_coding Homo_sapiens 0 1604
ENST00000392955 ABLIM1-002 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000428430 ABLIM1-011 protein_coding Homo_sapiens 0 754
ENST00000440467 ABLIM1-012 protein_coding Homo_sapiens 0 640
ENST00000466400 ABLIM1-014 retained_intron Homo_sapiens 0 213
ENST00000533213 ABLIM1-203 protein_coding Homo_sapiens 0 1072

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