C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TruB pseudouridine (psi) synthase homolog 1 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026073 Trub1-202 ENSMUSG00000025086 10090 + 19:57452906-57491005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026073 2.542±0.80 5.976±0.88 2.447±0.32 3.211±0.87 2.335±1.03 1.840±0.40 0.955±0.06 2.634±0.29 3.062±0.41 1.342±0.13 0.934±0.20 3.578±1.27 1.835±0.60 0.518±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019G CIL_00019G_0002 CGP 19:57361009-57491005
CIL_0002OD CIL_0002OD_0002 CGP 19:57452906-58133338

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008033 IEA tRNA processing
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298746 TRUB1-001 protein_coding Homo_sapiens 0 800
ENST00000485065 TRUB1-002 processed_transcript Homo_sapiens 0 431

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